BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333426
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13560.1 | Symbols: AAPT1, ATAAPT1 | aminoalcoholphosphotran... 869 0.0
> AT1G13560.1 | Symbols: AAPT1, ATAAPT1 | aminoalcoholphosphotransferase
1 | chr1:4638514-4642104 REVERSE LENGTH=1666
Length=1666
Score = 869 bits (470), Expect = 0.0
Identities = 511/531 (96%), Gaps = 2/531 (0%)
Strand=Plus/Plus
Query 317 AGATCCAAACTTCCAGAGCAGTGCTATACATGATGATCGCTTTTGCTGTTATACCAACCG 376
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AGATTCAAACTTCTAGAGCAGTGCTATACATGATGATCGCTTTTGCTGTTATACCAACCG 876
Query 377 TTGCATTCAATGTGTCAAATGTCTACAAAGTCGTTCAATCAAGAAAAGGGAGCATGGTGT 436
||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 877 TTGCATTCAATGTAACAAATGTCTACAAAGTCGTTCGATCAAGAAACGGGAGCATGGTGT 936
Query 437 TAGCACTAGCTATGCTGTATCCCTTTGTTGTCCTACTTGGAGGAGTTTTGATATGGGATT 496
|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 937 TAGCGTTAGCTATGCTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATGGGATT 996
Query 497 ACTTGTCTCCAATCAATCTCATAGCAACATACCCTCACTTAGTTGTACTCGGAACTGGAC 556
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 997 ACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGTACTCGGAACTGGAC 1056
Query 557 TTGCATTTGG-TTTTCTAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAA 615
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTGCATTTGGATTTT-TAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAA 1115
Query 616 GGACTAAAAACAAACATGTGCATGTCGCTACTCTATCTTCCCTTTGCGCTCGCAAATGCG 675
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1116 GGACTAAAAACAAACATGTGCATGTCACTACTCTATCTTCCCTTTGCACTTGCAAATGCG 1175
Query 676 CTAACCGCGAGATTGAATGCTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGC 735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CTAACCGCAAGATTGAATGCTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGC 1235
Query 736 TACTGCATATTCACAGTGTCATTATACTTGCACTTTGCAACATCGGTCATCCATGAGATC 795
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1236 TACTGCATATTCACAGTGTCATTATACTTGCACTTTGCAACATCAGTCATCCATGAGATC 1295
Query 796 ACTGAGGCTCTTGGAATCTACTGCTTCAGGATCACGCGTAAAGAAGCTTGA 846
|||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1296 ACTGAGGCCCTTGGAATCTACTGCTTTAGGATCACGCGTAAAGAAGCTTGA 1346
Score = 449 bits (243), Expect = 2e-125
Identities = 296/320 (93%), Gaps = 9/320 (3%)
Strand=Plus/Plus
Query 1 ATGGGGTTTATGTTTCTTGTCACTTCTTCCCTGCTAGGTTATATATATTCACCTCAGTTG 60
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 333 ATGGGGTTTATGTTTCTAGTCACTTCCTCCCTGCTAGGCTATATATATTCACCTCAGTTG 392
Query 61 GATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG 452
Query 121 ACATTCGATGCGGTCGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTGGGA 180
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 453 ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGA 512
Query 181 GAGCTTTTCGATCATGGTTGTGACGCACTTGCTTGTGCG-------CCATGGCATTTGCA 233
||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 513 GAGCTCTTCGATCATGGTTGTGACGCGCTTGCTTGTGCGTTTGAAGCCATGGCATTTGGA 572
Query 234 AGCACTGCGATGTGAGAAAGAGATACTTTCTGGTTGTGGGTTATTTCAGCTATTCCATTT 293
|||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 573 AGCACTGCAATGTGTGGAAGAGATACTTTCTGGTTCTGGGTTATTTCAGCTATTCCATTT 632
Query 294 TATCGCAGCTACGATGAGAA 313
||| | |||||| ||| |||
Sbjct 633 TATGG-AGCTAC-ATGGGAA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5