BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333812 Length=1665 Score E Sequences producing significant alignments: (Bits) Value AT1G04950.1 | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIA... 2606 0.0 > AT1G04950.1 | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIATED FACTOR II 59 | chr1:1403085-1407468 REVERSE LENGTH=2192 Length=2192 Score = 2606 bits (1411), Expect = 0.0 Identities = 1591/1673 (95%), Gaps = 31/1673 (2%) Strand=Plus/Plus Query 1 ATGAGCATTGTACCTAAGGAAACGGTGGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 177 ATGAGCATTGTACCTAAGGAAACGGTTGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 236 Query 61 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTCGAGTATCGTGTCCGAGAGATC 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 237 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTTGAGTATCGTGTCCGAGAGATC 296 Query 121 ATGCAGGAAGCTATCAAATGCATGCGTCATTCAAAGAGAACGACTTTAACAGCTTCGGAT 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 297 ATGCAGGAAGCTATCAAATGCATGCGTCACTCAAAGAGAACGACTTTAACAGCTTCGGAT 356 Query 181 GTAGATGGTGCTCTCAACTTGAGGAACGTTGAGCCGATATATGGCTTTGCCTCAGGAGGA 240 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 357 GTAGATGGTGCTCTCAACTTAAGGAACGTTGAGCCGATATATGGATTTGCCTCAGGAGGG 416 Query 241 CCATTTCGTTTTAGAAAAGCTATTGGGCATCGCGATTTGTTCTACACTGATGACAGAGAA 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 417 CCATTTCGTTTTAGAAAAGCTATTGGACATCGCGATTTGTTCTACACTGATGACAGAGAA 476 Query 301 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTACCAAAAGCTCCCCTTGATACTGAAATT 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 477 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTGCCAAAAGCTCCCCTTGATACTGAAATT 536 Query 361 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 596 Query 421 GAAGTCATTAGAGCACCTGCAGAAAACAAAATCCATGAACAAAAAGACGGACCTCCTATT 480 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 597 GAAGTCATTAGAGCACCTGCAGAAACCAAAATCCATGAACAAAAAGACGGACCTCTTATT 656 Query 481 GACGTTAGGCTACCAGTAAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 540 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GACGTTAGGCTACCAGTGAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 716 Query 541 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTGCTCTGTTTAAAGAAGCATTAGTGAGC 600 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 717 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTCCTCTGTATAAAGAAGCATTAGTGAGC 776 Query 601 TTGGCCTCAGACTCCGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGCTGAT 660 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 777 TTGGCCTCAGACTCAGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGC---T 833 Query 661 GAGGTAACATTATGCACCACCAAGGTTTCAAATGGTTTAAAAGACTTTCGACTCCTGTTT 720 | ||| ||||||||||||| ||||| ||||| |||||||||||| Sbjct 834 ---G-------ATG--------AGGTTTCAAATGGCTTAAATGACTTCCGACTCCTGTTT 875 Query 721 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATAAACATAGAACCTTAT 780 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 876 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATACACATAGAACCTTAT 935 Query 781 CTGTACCAGTTGATGCCATCTGTTGTAACGTGCCTTGTATCAAGAAAGCTTGGAAATAGA 840 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 936 CTGCACCAGTTGATGCCATCTGTTGTAACATGCCTTGTATCAAGAAAGCTTGGAAATAGA 995 Query 841 TTTGCTGACAACCATTGGGAACTCAGAGATTTTGCGTCAAATCTGGTTGCACTGATATGT 900 |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 996 TTTGCTGACAACCACTGGGAACTCAGAGATTTTGCGGCAAATCTGGTTTCACTGATATGT 1055 Query 901 AAAAGGTACGGACCCGTTTATATTACTCTTCAGTCTCGTCTTACAAGAACTTTAGTCAAT 960 |||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1056 AAAAGGTATGGAACCGTTTATATAACTCTTCAGTCTCGTCTTACCAGAACTTTAGTCAAT 1115 Query 961 GCACTGTTGGACCCAAAGAAAGCTTTGACTCAGCACTATGGTGCAATT-AGAGGATTAGC 1019 |||||| ||||||||||||| ||||||||||||||||||||||| ||| | ||||||||| Sbjct 1116 GCACTGCTGGACCCAAAGAAGGCTTTGACTCAGCACTATGGTGCGATTCA-AGGATTAGC 1174 Query 1020 AGCTTTGGGGCACAATATTGTACGCCTT-TTAATTCTATCAAATCTCGAACCGTATCTAA 1078 |||||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 1175 AGCTTTGGGGCACACTGTTGTACGCCTTCTT-ATTCTATCAAATCTCGAACCATATCTAA 1233 Query 1079 GTCTTCTCCAACCTGAATTGGATGCTGAGAAGCaaaaaaaTCAGATGAAGAACTACGAAG 1138 |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1234 GTCTTCTCGAACCTGAATTGAATGCTGAGAAGCAAAAAAATCAGATGAAGATCTACGAAG 1293 Query 1139 CTTGGTGTGTATATGGAGCCTTGCTGCGAGCTGCAGGCTTGTGTATACATGACCGGCTTA 1198 ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 1294 CTTGGCGTGTATATGGAGCCTTGCTGCGTGCTGCAGGCTTGTGTATACATGGCCGGCTTA 1353 Query 1199 AAATCTTCCCACCTTTACCATCTCCATCACCAAGTTTCCTCCAT------AAGGGAAAGG 1252 ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct 1354 AAATCTTCCCACCTTTACCATCTCCGTCACCAAGTTTTCTCCATAAGGGAAAGGGAAAGG 1413 Query 1253 GAAAGATAATCAATACTGATCCCCACAAGCGGAAGCTGAGCATAGATTCTTCAGAAAACC 1312 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1414 GAAAGATAATCAGTACTGATCCCCACAAGCGGAAGCTGAGTGTAGATTCTTCAGAAAACC 1473 Query 1313 AATCGCCACAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTGCAATCACAAGATC 1372 |||| || |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1474 AATCACCGCAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTACATTCACAAGATC 1533 Query 1373 AATCCGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1432 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1534 AATCTGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1593 Query 1433 ACTCTGTTCAGCCATCCTCATCAGAACAAGCTTCTGATGCTAACGAATCTGAAAGCAGAA 1492 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1594 ACTCTGTTCAGCCATCCTCATCAGAACAAGCCTCTGATGCTAACGAATCTGAAAGCAGAA 1653 Query 1493 ATGGAAAGGTGAAAGAAAGCGGTAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1552 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1654 ATGGAAAGGTGAAAGAAAGCGGCAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1713 Query 1553 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1714 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1773 Query 1613 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1665 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1774 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1826 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82278693255 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5