BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333932

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01355.1 | Symbols:  | Putative endonuclease or glycosyl hyd...   159    2e-38


> AT1G01355.1 | Symbols:  | Putative endonuclease or glycosyl hydrolase 
| chr1:138513-139568 FORWARD LENGTH=687
Length=687

 Score =  159 bits (86),  Expect = 2e-38
 Identities = 154/185 (83%), Gaps = 12/185 (6%)
 Strand=Plus/Plus

Query  53   GGTGTCCGGTTCCCACTGGCTTTGATGCTCGTC-GGGTCGGTCCGTGTATCAGACGGT-T  110
            |||||||||||||  ||| | |||||| ||| | |||||||||||||||| | ||||  |
Sbjct  29   GGTGTCCGGTTCCGGCTGACGTTGATGTTCG-CAGGGTCGGTCCGTGTATAAAACGGGCT  87

Query  111  ATTGGAGAATTTAGGCTACACTGGTCCTCTCACCATCACTGCCGTTGGCATACTGACAGA  170
             |||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct  88   -TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGGATACTAACAGA  146

Query  171  CG-CCTCTGATGACTTTCTGCGAGCCA--TC-ACTTCCACTGGAATCACTCTTGATCACG  226
            || || || ||||||| || | || ||  || | |||| |||||||| ||||| ||||||
Sbjct  147  CGTCC-CTCATGACTTCCT-C-AGACAAGTCCA-TTCCTCTGGAATCGCTCTTCATCACG  202

Query  227  TCCCC  231
            | |||
Sbjct  203  TTCCC  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30693063817


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5