BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334627
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13280.1 | Symbols: AOC4 | allene oxide cyclase 4 | chr1:454... 1181 0.0
> AT1G13280.1 | Symbols: AOC4 | allene oxide cyclase 4 | chr1:4547454-4548875
FORWARD LENGTH=1258
Length=1258
Score = 1181 bits (639), Expect = 0.0
Identities = 719/759 (95%), Gaps = 0/759 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTGCTGCTGCATCGATCTCTTTGATAACTCTAAGGAACCTCTCTCGCAAT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 177 ATGGCTTCTTCTGCTGCTGCATCGATCTCTATGATAACTCTAAGGAACCTCTCTCGCAAT 236
Query 61 CATCAATCTCACCTAAGCTCTCTTCTTGGTTTCTCTAGATCCTTCCATAACCAAAGGATC 120
||||||||||||| |||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 237 CATCAATCTCACCAAAGCACTTTTCTCGGTTTCTCTAGATCCTTCCATAACCAAAGGATC 296
Query 121 TCATCTAACGGTCCAGGTTTCTCCAAACGAGCAAGATCCACCACTTCCTCCACTAGAGGT 180
||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 297 TCATCTAACAGTCCAGGTCTCTCCACACGAGCAAGATCCACCACTTCCTCCACTGGAGGT 356
Query 181 TTCTTCAGAACCATTTGCAGCAGCAGCAACAGCGACAACTCCAGACCAACTAAGATCCAA 240
|||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||
Sbjct 357 TTCTTCAGAACCATTTGCAGCAGCAGTAGCAATGACTACTCCAGACCAACTAAGATCCAA 416
Query 241 GAGCTTAACGTGTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTCTAAAACTC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 GAGCTTAACGTCTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTTTAAAACTA 476
Query 301 GGaaaaaaaCCAGATCAGCTTTGTCTCGGCGATCTTGTCCCCTTCACAAACAAACTCTAC 360
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 GGGAAAAAACCAGATCAGCTTTGTCTCGGAGATCTTGTCCCCTTCACAAACAAACTCTAC 536
Query 361 ACCGGAGATCTTACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACAT 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACAGGAGATCTCACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACAT 596
Query 421 GTTCCAGAGAAGAAAGGTGATCGTTTTGAAGCCTCTTACAGTTTCTACTTCGGAGATTAT 480
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 597 GTTCCAGAGAAGAAAGGTGATCGCTTTGAAGCTTCTTACAGTTTCTACTTCGGAGATTAT 656
Query 481 GGCCACATATCCGTACAAGGACCTTATCTCACTTATGAGGATACGTTTCTTGCTATCACC 540
|| |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 657 GGTCACATATCAGTTCAAGGACCTTATCTCACTTACGAGGACACGTTTCTTGCTATCACC 716
Query 541 GGTGGCTCCGGCGTCTTTGAAGGAGCGTACGGACAGGTCAAGCTTCGTCAGCTTGTGTAT 600
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 717 GGTGGCTCCGGCGTGTTTGAAGGAGCTTATGGACAGGTCAAGCTTCGTCAGCTTGTGTAT 776
Query 601 CCAACGAAGTTGTTTTACACTTTTTACTTGAAAGGTGTTGTTGCTGATTTGCCGGTGGAG 660
|| |||||| ||||||||||||| |||||||||||||||| ||||||||| || ||||||
Sbjct 777 CCTACGAAGCTGTTTTACACTTTCTACTTGAAAGGTGTTGCTGCTGATTTACCTGTGGAG 836
Query 661 CTTACCGGGAAACATGTTGAGCCGTCGAAGGATGTGAAACCGGCGGCGGAAGCTCAGGCG 720
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 837 CTTACCGGAAAACATGTTGAGCCGTCGAAGGAAGTGAAACCGGCGGCTGAAGCTCAGGCG 896
Query 721 ACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA 759
|||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5