BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334804
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15125.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1650 0.0
> AT1G15125.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:5204625-5205912
FORWARD LENGTH=1056
Length=1056
Score = 1650 bits (893), Expect = 0.0
Identities = 1009/1064 (95%), Gaps = 11/1064 (1%)
Strand=Plus/Plus
Query 1 ATGAACGGTGGAGACGGTGCTTCTAGCTATGCTCGCAACTCTTCCTATCAGAGGGGAGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACGGTGGAGACGGTGCTTCTAGCTATGCTCGCAACTCTTCCTATCAGAGGGGAGCC 60
Query 61 ATTGAGGCTGCTGAAGCACTCCTCAGGAACGAGATCAACACGCGGCTCGACATCACCAAA 120
||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 61 ATTGAGGCTGCGGAAGCACTCCTCAGGAACGAGATCAACGCACGGCTCGACATCACTAAC 120
Query 121 CATTCATTCTCGTCTTTTACAATCGCAGACTTTGGATGCTCCTCCGGACCCAACACCATT 180
||||| || || ||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 121 CATTCCTTTTCATCTTTTACAATCGCAGACTTTGGTTGCTCCTCCGGCCCCAACACCGTA 180
Query 181 CTTGCTGTAGACATCATCATCCAAGCCCTCTACCACAAGTTCACCTCTTCTCTGCCTAAT 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGCTGTCGACATCATCATCCAAGCCCTCTACCACAAGTTCACCTCTTCTCTGCCTAAT 240
Query 241 ACTACAACTCCTCAGTTTCAAGTCTTCTTCAACGACGTCCCCCACACTGATTTCAATGCA 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 ACTACAACTCCTCAGTTTCAAGTCTTCTTCAACGACGTCTCCCACACTGATTTCAATGCA 300
Query 301 CTCTTTGCTTTGCTCCCTCCACAACGCCCCTACTTCGTTGCAGGTGTCCCCGGTACCTTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 CTCTTTGCTTTGCTCCCTCCACAACGCCCCTACTTCGTTGCAGGTGTCCCCGGTTCCTTT 360
Query 361 TATGGAAACTTGTTTCCCAAGGCACATCTCAACTTGGCCTTCTCCTCTTGCGCCCTCTGT 420
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TATGGAAACTTGTTTCCAAAGGCACATCTCAACTTGGCCTACTCCTCTTGCGCCCTCTGC 420
Query 421 TGGCTCTCTGAGTTGCCACCCGAGCTAACTGACATAAGCTCTCCTGCTTACAACAGAGGC 480
|||||||| || |||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 421 TGGCTCTCCGACTTGCCATCCGAGCTAACTGATACAAGCTCTCCTGCTTACAACAGAGGC 480
Query 481 AGGATTCACTACACGGAAGCATCAGCAGAGGTTGCACAAGCCTACTCTTATCAGTACAAG 540
|||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 481 AGGATTCACTACACGGGAGCATCAGCAGAGGTTGCACAAGCTTACTCCTCTCAGTACAAG 540
Query 541 AAGGATATCAAGCTGTTTTTGCATGCTAGGTCACAAGAGCTCGCAGAAAACGGGTTGATG 600
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 AAGGATATCAAGTTGTTTTTGCATGCTAGGTCACAGGAGCTCGCAGAAAACGGGTTGATG 600
Query 601 GCACTGATTGTGCCCGGTGTACCAGATGGTTTTCTTGATAGTCAGGAGGCTTCAACGGGA 660
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 601 GCACTGATTGTGCCCGGTGTACCAGATGGTTTTCTCGATTGTCAGGAGGCTTCAACGGGA 660
Query 661 TCCGAGTTCGATCTGTTGGGTTCATGCCTCATGGACATGGCCAGAGAGGTACGTGGTGGG 720
||||||||||||||||||||||||||||||||||||||||||| | || | | ||
Sbjct 661 TCCGAGTTCGATCTGTTGGGTTCATGCCTCATGGACATGGCCA-A-AG--A-G-GG---- 710
Query 721 AATAATAAAGGAGGCGGAGGTGGACAGTTTCAACCTTCCCATATATTACACAACTCCAA- 779
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 711 AATAATAGAGGAGGAGGAGGTGAACAGTTTCAACCTTCCCATATATTACACAACTCCAAA 770
Query 780 GGAACTGGAAGACATCATCAGAAGCAACGGAAAGTTGAGAATTGATAAAATGGAGACACT 839
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 771 GGAACTGGAAGACATCATCAGAAGCAACGGAGAGTTGAAAATTGATAAAATGGAGACACT 830
Query 840 GGGGAGCATGGACGCGCAAGACACTATGCCTGACCTCGAGTCAAGGGTTCTGTACCTGAG 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GGGGAGCATGGACGCACAAGACACTATGCCTGACCTCGAGTCAAGGGTTCTGTACCTGAG 890
Query 900 AGCGGTGCTGGAAGGTCTCGTTCGCACCCACTTTGGCCACCAAATCCTCGACGACCTGTT 959
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 891 AGCTGTGCTGGAAGGTCTAGTTCGTACCCACTTTGGCCACCAAATCCTCGACGACCTGTT 950
Query 960 TGATCGCTACGCCCTCAAACTTGCTCATTCCTCTTTCATCCTCCAGCCTCGAACCCACAA 1019
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 951 TGATCGCTACGCCCTCAAACTTGCTCATTCCTCTTTCATCCTTCAGCCTCAAACCCACAA 1010
Query 1020 ATCCATCATGATCTTTGCCCTCCTCAGTCGCTGTCATGACATCT 1063
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1011 ATCCATCATGATCTTTGCCCTTCTCAGTCGCTGTCATGACATCT 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5