BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg334946 Length=624 Score E Sequences producing significant alignments: (Bits) Value AT1G16730.1 | Symbols: UP6 | unknown protein 6 | chr1:5726368-5... 839 0.0 > AT1G16730.1 | Symbols: UP6 | unknown protein 6 | chr1:5726368-5727312 REVERSE LENGTH=858 Length=858 Score = 839 bits (454), Expect = 0.0 Identities = 570/624 (91%), Gaps = 15/624 (2%) Strand=Plus/Plus Query 1 ATGGAAAATCATCACCGAACCTCCGCCACAAAATCCGACGGCGAAGCAGTGTCGGACGGT 60 ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| | Sbjct 1 ATGGAAAATCATCACCGAATATCCGCCACAAAATACAACGGCGAAGCAGTGTCGGACGAT 60 Query 61 GTGGGCCAGGGGAAGCTATATTCTCCGAACCACGCGATCAAAATCGCTCCAAAATCCGAC 120 |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| Sbjct 61 GTGGGCCAGGGGAAGCTATATTCTCCAAACCACGCGATCAAAATCTCTCCAGAATCCGAC 120 Query 121 GAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAAC 180 Query 181 CCTAATTCTGTGGATTCATCATCAGAGGAAGAAGAAGGGGAGAAACAGAGGAAGACGATG 240 ||| |||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 181 CCTGATTCCGTGGATTCCTCATCAGAGGAAGAAGAAGGAGAGAAGCAGAGGAAGACGATC 240 Query 241 ATGTTGGGGCTGAAGAATCTTGCATCTGTTAAGGATAAAGTTTTGGAGAAACTAGCGGCT 300 ||||||||||||||||||||||| | |||||||||||||| || || |||||| ||||| Sbjct 241 ATGTTGGGGCTGAAGAATCTTGCGGCGGTTAAGGATAAAGTGTTAGAAAAACTATCGGCT 300 Query 301 GCTTCGGTTCCATCGGAGTCGCTTGAAAACGCGAAACAGTTTTTGGAAGGTGCGATTAAG 360 |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 301 GCTTCGGTTCCATCTGAGTCGCTTGAAAACGCTAAACAGTTTTTGGAAGGAGCCATTAAG 360 Query 361 GATTTCGCTGGAGCGGCGCAGGGTATGACGAAAGACGCCTTGCACCGAATTAAAACTCAT 420 |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 361 GATTTCGCCGGAGCGGCGCAGGGTATGACGAAAGACGCGTTGCACCGGATTAAAACTCAG 420 Query 421 CTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCTGTCACCGGAAAGATAGTGGACGATGCT 480 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 421 CTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCCGTCACCGAAAAGATAGTGGACGATGCT 480 Query 481 GAGAAAGAAGCCACTAACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCTTCGGA 540 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | Sbjct 481 GAGAAAGAAGCCATTGACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCT-C--- 536 Query 541 GACGAAGTCGCCGAAAAGTTGCCGTATGTGTCTCCGACGTCTTCATTTTTCGGCTCTCTC 600 || | ||| |||||||| ||| |||||||| ||||| |||||| |||||||| Sbjct 537 --CG--G------AAA-GTTGCCGTTTGTTTCTCCGACATCTTCGTTTTTCAGCTCTCTC 585 Query 601 GCCAAACCTTTCTCGAAGCTTTGA 624 |||||||||||||| ||||||||| Sbjct 586 GCCAAACCTTTCTCCAAGCTTTGA 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30090254053 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5