BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334956

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   647    0.0  


> AT1G16850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to salt stress; 
LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, 
leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: 
LP.06 six leaves visible, LP.04 four leaves visible, LP.10 
ten leaves visible, petal differentiation and expansion stage, 
LP.08 eight leaves visible; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast 
hits to 24 proteins in 6 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr1:5764807-5765651 
REVERSE LENGTH=747
Length=747

 Score =  647 bits (350),  Expect = 0.0
 Identities = 388/407 (95%), Gaps = 0/407 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGAAAAAGTAAACCCTGGGCAAGTTTTTAACCTACTATGCATATTCTCGATCTTC  60
            |||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||| 
Sbjct  34   ATGGCTGAAAAAGTAAAGTCTGGTCAAGTTTTTAACCTATTATGCATATTCTCGATCTTT  93

Query  61   TTCTTCGTCTTCGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG  120
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   TTCTTCCTCTTTGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG  153

Query  121  CCATCTGAAGACAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTACAAAT  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  154  CCATCTGAAGATAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTAAAAAT  213

Query  181  TATTGGGCCAAACTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCACCGAAC  240
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  214  TATTGGGCTAAAGTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCTCCGAAC  273

Query  241  ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG  333

Query  301  GCGACTAGGAGCTTTGAGAATAGTAAAGCAACAGTGGAGGAAGCTGCTAGATCAGCGGCG  360
            ||||| |||||||||||| |||| ||||| || |||||||||||||||||||||||||| 
Sbjct  334  GCGACGAGGAGCTTTGAGCATAGCAAAGCGACGGTGGAGGAAGCTGCTAGATCAGCGGCA  393

Query  361  GAAGTGGTGAGTGATACGGCGGAAACTGTGAAAGAAAAGGTGAAGAG  407
            |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  394  GAAGTGGTGAGTGATACGGCGGAAGCTGTGAAAGAAAAGGTGAAGAG  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5