BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg334956 Length=444 Score E Sequences producing significant alignments: (Bits) Value AT1G16850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 647 0.0 > AT1G16850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5764807-5765651 REVERSE LENGTH=747 Length=747 Score = 647 bits (350), Expect = 0.0 Identities = 388/407 (95%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 1 ATGGCTGAAAAAGTAAACCCTGGGCAAGTTTTTAACCTACTATGCATATTCTCGATCTTC 60 ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 34 ATGGCTGAAAAAGTAAAGTCTGGTCAAGTTTTTAACCTATTATGCATATTCTCGATCTTT 93 Query 61 TTCTTCGTCTTCGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG 120 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 TTCTTCCTCTTTGTGTTATCAGTGAATGTTTCGGCTGATGTCGATTCTGAGAGAGCGGTG 153 Query 121 CCATCTGAAGACAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTACAAAT 180 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 154 CCATCTGAAGATAAAACGACGACTGTTTGGCTAACTAAAATCAAACGGTCCGGTAAAAAT 213 Query 181 TATTGGGCCAAACTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCACCGAAC 240 |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 214 TATTGGGCTAAAGTTAGAGAGACTTTGGATCGTGGACAGTCCCACTTCTTTCCTCCGAAC 273 Query 241 ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 ACATATTTTACCGGAAAGAATGATGCGCCGATGGGAGCCGGTGAAAATATGAAAGAGGCG 333 Query 301 GCGACTAGGAGCTTTGAGAATAGTAAAGCAACAGTGGAGGAAGCTGCTAGATCAGCGGCG 360 ||||| |||||||||||| |||| ||||| || |||||||||||||||||||||||||| Sbjct 334 GCGACGAGGAGCTTTGAGCATAGCAAAGCGACGGTGGAGGAAGCTGCTAGATCAGCGGCA 393 Query 361 GAAGTGGTGAGTGATACGGCGGAAACTGTGAAAGAAAAGGTGAAGAG 407 |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 394 GAAGTGGTGAGTGATACGGCGGAAGCTGTGAAAGAAAAGGTGAAGAG 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21112454580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5