BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335306 Length=429 Score E Sequences producing significant alignments: (Bits) Value AT1G20580.1 | Symbols: | Small nuclear ribonucleoprotein famil... 566 7e-161 AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:28... 337 6e-92 AT1G20600.1 | Symbols: | AP2/B3-like transcriptional factor fa... 97.1 1e-19 > AT1G20580.1 | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7128884-7130642 FORWARD LENGTH=762 Length=762 Score = 566 bits (306), Expect = 7e-161 Identities = 324/333 (97%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 1 ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCTTCTGGTCATATCGTG 60 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 96 ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCCTCAGGTCATATCGTG 155 Query 61 ACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 ACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAAC 215 Query 121 TGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 TGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTT 275 Query 181 GAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAG 240 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 276 GAGCATGTCTTCATTCGAGGCAGTAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAA 335 Query 241 CATGCTCCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTAGGT 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 336 CATGCTCCAATGTTCAAGCGGTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTGGGT 395 Query 301 GTTGGCAGAGGTCGAGCTGCAATGCGAGGGAAA 333 |||||||||||| ||| |||||||||||||||| Sbjct 396 GTTGGCAGAGGTAGAGGTGCAATGCGAGGGAAA 428 > AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:28625884-28627367 FORWARD LENGTH=747 Length=747 Score = 337 bits (182), Expect = 6e-92 Identities = 285/333 (86%), Gaps = 13/333 (4%) Strand=Plus/Plus Query 1 ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCTTCTGGTCATATCGTG 60 ||||| || |||||||| || |||||||||||||||||||| | || |||||||||||| Sbjct 74 ATGAGTCGGAGTTTGGGGATTCCGGTGAAGCTTCTTCACGAATCGTCCGGTCATATCGTG 133 Query 61 ACG-GTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAA 119 | | || ||| | |||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 134 A-GTGTAGAGATGAAGAGCGGTGAGCTTTACAGAGGAAGCATGATCGAGTGTGAGGATAA 192 Query 120 CTGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCT 179 |||||||||||||||||| | || || ||||| |||||||||||||||||||||||||| Sbjct 193 TTGGAACTGTCAGCTCGAGAACATCACCTATACGGCCAAGGATGGTAAGGTATCACAGCT 252 Query 180 TGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACAT-TCTCA 238 ||||||||| ||||||||||||||| |||||||||| | |||||||||||||| | | | Sbjct 253 TGAGCATGTCTTCATTCGAGGCAGCTTAGTCAGGTTTTTAGTCATACCAGACATGT-TAA 311 Query 239 AGCATGCTCCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTAG 298 || ||||||||||||||||| | | | | ||| ||||||||||||| | ||||||| Sbjct 312 AGAATGCTCCAATGTTCAAG-GAT--G-T--TAGGGGCAAGGGAAAGAGCGCTTCACTAG 365 Query 299 GTGTTGGCAGAGGTCGAG---CTGCAATGCGAG 328 |||| ||||||||| ||| |||||||||||| Sbjct 366 GTGTAGGCAGAGGTAGAGGTGCTGCAATGCGAG 398 > AT1G20600.1 | Symbols: | AP2/B3-like transcriptional factor family protein | chr1:7133111-7134416 FORWARD LENGTH=893 Length=893 Score = 97.1 bits (52), Expect = 1e-19 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 160 GATGGTAAGGTATCACAGCTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGT 214 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 643 GATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAGGCAGCAAAGTCAGGT 697 Score = 82.4 bits (44), Expect = 3e-15 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 370 TTAGGGTACGCTGTAAAACCAAAC-AAGAGAGAACAAGAGAGATATGTCCAGATGCACTA 428 |||| | || |||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 711 TTAGAGAACACTGTAAAACCAAACAAAG-GAGAACAAGAGAGATATGTCCAGATGCACTA 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20358438345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5