BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335306

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   566    7e-161
  AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:28...   337    6e-92 
  AT1G20600.1 | Symbols:  | AP2/B3-like transcriptional factor fa...  97.1    1e-19 


> AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr1:7128884-7130642 FORWARD LENGTH=762
Length=762

 Score =  566 bits (306),  Expect = 7e-161
 Identities = 324/333 (97%), Gaps = 0/333 (0%)
 Strand=Plus/Plus

Query  1    ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCTTCTGGTCATATCGTG  60
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  96   ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCCTCAGGTCATATCGTG  155

Query  61   ACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  156  ACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAAC  215

Query  121  TGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  TGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTT  275

Query  181  GAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAG  240
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  276  GAGCATGTCTTCATTCGAGGCAGTAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAA  335

Query  241  CATGCTCCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTAGGT  300
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  336  CATGCTCCAATGTTCAAGCGGTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTGGGT  395

Query  301  GTTGGCAGAGGTCGAGCTGCAATGCGAGGGAAA  333
            |||||||||||| ||| ||||||||||||||||
Sbjct  396  GTTGGCAGAGGTAGAGGTGCAATGCGAGGGAAA  428


> AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:28625884-28627367 
FORWARD LENGTH=747
Length=747

 Score =  337 bits (182),  Expect = 6e-92
 Identities = 285/333 (86%), Gaps = 13/333 (4%)
 Strand=Plus/Plus

Query  1    ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCTTCTGGTCATATCGTG  60
            ||||| || |||||||| || ||||||||||||||||||||  | || ||||||||||||
Sbjct  74   ATGAGTCGGAGTTTGGGGATTCCGGTGAAGCTTCTTCACGAATCGTCCGGTCATATCGTG  133

Query  61   ACG-GTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAA  119
            | | || ||| | |||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct  134  A-GTGTAGAGATGAAGAGCGGTGAGCTTTACAGAGGAAGCATGATCGAGTGTGAGGATAA  192

Query  120  CTGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCT  179
             |||||||||||||||||| | || || ||||| ||||||||||||||||||||||||||
Sbjct  193  TTGGAACTGTCAGCTCGAGAACATCACCTATACGGCCAAGGATGGTAAGGTATCACAGCT  252

Query  180  TGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACAT-TCTCA  238
            ||||||||| |||||||||||||||  |||||||||| | |||||||||||||| | | |
Sbjct  253  TGAGCATGTCTTCATTCGAGGCAGCTTAGTCAGGTTTTTAGTCATACCAGACATGT-TAA  311

Query  239  AGCATGCTCCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTAG  298
            || ||||||||||||||||| | |  | |  |||   ||||||||||||| | |||||||
Sbjct  312  AGAATGCTCCAATGTTCAAG-GAT--G-T--TAGGGGCAAGGGAAAGAGCGCTTCACTAG  365

Query  299  GTGTTGGCAGAGGTCGAG---CTGCAATGCGAG  328
            |||| ||||||||| |||   ||||||||||||
Sbjct  366  GTGTAGGCAGAGGTAGAGGTGCTGCAATGCGAG  398


> AT1G20600.1 | Symbols:  | AP2/B3-like transcriptional factor 
family protein | chr1:7133111-7134416 FORWARD LENGTH=893
Length=893

 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 54/55 (98%), Gaps = 0/55 (0%)
 Strand=Plus/Plus

Query  160  GATGGTAAGGTATCACAGCTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGT  214
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  643  GATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAGGCAGCAAAGTCAGGT  697


 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 55/60 (92%), Gaps = 2/60 (3%)
 Strand=Plus/Plus

Query  370  TTAGGGTACGCTGTAAAACCAAAC-AAGAGAGAACAAGAGAGATATGTCCAGATGCACTA  428
            |||| | || |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  711  TTAGAGAACACTGTAAAACCAAACAAAG-GAGAACAAGAGAGATATGTCCAGATGCACTA  769



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5