BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335470

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22250.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   898    0.0  
  AT1G78170.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   204    1e-51


> AT1G22250.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G78170.1); 
Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7858864-7859766 
FORWARD LENGTH=818
Length=818

 Score =  898 bits (486),  Expect = 0.0
 Identities = 570/610 (93%), Gaps = 8/610 (1%)
 Strand=Plus/Plus

Query  1    ATGTTTTCTCTACGTGATGGAACCCTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT  60
            |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  98   ATGTTTTCTCCACATGATGGAACACTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT  157

Query  61   GGAGAATCGTTTCATGGTTCTTTTAAACGGAGCAAACAAGAAGATCAAACACAAACCAAA  120
            ||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||
Sbjct  158  GGAGAATCGTTTCATGGTTCTTTCAAAAGGAGCAAACAAGGAGATCAAAAACAAACCAAA  217

Query  121  CTTGAGAAGAACTCTACTACTCTGGTT-TTTCAAAGATCAAAGTCAGAGAGCGCCATGTT  179
             ||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct  218  TTTGAGAAGAACACTACTACTCT-GTTCTTTCAAAGATCAAAGTCAGATAGCGCCATGTT  276

Query  180  GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA  336

Query  240  TCATAGGACAGACCTGGACCTTAATTTGAATCTTTCTTCGTCATCAAGTTTCAATATGaa  299
            |||||||||||||||||||||||||||||| |||| |||||||||||||| |  | | ||
Sbjct  337  TCATAGGACAGACCTGGACCTTAATTTGAACCTTTATTCGTCATCAAGTTCCTCTGTCAA  396

Query  300  aaaaaCAATCATGGAGAAAGATGAATGTTCGAAAGGAGTATCTTTGATCATGACTACCCC  359
            |||||||||||||||||||||||||||||| ||||| | | || |||||||  | | |||
Sbjct  397  AAAAACAATCATGGAGAAAGATGAATGTTCCAAAGGCGGAACTGTGATCAT--C-AGCCC  453

Query  360  AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  454  AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT  513

Query  420  TGAAGGTGATGATGATGATGATAGTCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCAT  479
            ||||||||||||||||||| | | ||||||||||||||||||| |||||||||| |||||
Sbjct  514  TGAAGGTGATGATGATGAT-A-A-TCAGAAGAAGCAAGAGATGATAACAACAGTGTGCAT  570

Query  480  GAAGTGTCACATGCTGGTTATGCTCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATT  539
            ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct  571  GAAGTGTCACATGCTGGTTATGCTCTGCAAATCTACTCTTGTCTGTCCTAACTGCAAATT  630

Query  540  CATGCACCAAGATGATCATAGCTCCACAAAACAGTTTAAGACTTTAAATTTGTTTAAGCT  599
            ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct  631  CATGCACCATGATGATCATAGCTCCACTAAACAGTTTCAGACTTTAAATTTGTTTAAGCT  690

Query  600  CTTGTGCTAG  609
            ||| ||||||
Sbjct  691  CTTATGCTAG  700


> AT1G78170.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G22250.1); 
Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29414059-29415094 
FORWARD LENGTH=920
Length=920

 Score =  204 bits (110),  Expect = 1e-51
 Identities = 191/229 (83%), Gaps = 9/229 (4%)
 Strand=Plus/Plus

Query  387  AGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTTTGAAGGTGATGATGAT---GATGATAG  443
            ||| ||||||||||| || || ||||||||||||||||||| |||||||   |||| | |
Sbjct  542  AGGACTAAGTCGATCACCATCCTGGCTAGCGTTTGAAGGTGGTGATGATAACGATG-TTG  600

Query  444  -TCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCATGAAGTGTCACATGCTGGTTATGC  502
             ||| |||  |||||||||||||||||||||||||||||| || ||||||||||||||| 
Sbjct  601  ATCACAAGGGGCAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGT  660

Query  503  TCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATTCATGCACCAAGATGATCATAGCT  562
            | |||| |||||||| ||| ||||| |||||||| |||||||||| | | ||||| ||||
Sbjct  661  TGTGTACATCAACTCCTGTTTGTCCCAACTGCAAGTTCATGCACCCACACGATCACAGCT  720

Query  563  CCACAAAACAGTTTAAGACTTT-AAATTTGTTTAAGCT-CTTGTGCTAG  609
            | ||||||| |||||| ||  | ||||||| ||| ||| ||  ||||||
Sbjct  721  CTACAAAACTGTTTAA-ACCATCAAATTTGCTTAGGCTTCTA-TGCTAG  767



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5