BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335470 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT1G22250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 898 0.0 AT1G78170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 204 1e-51 > AT1G22250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7858864-7859766 FORWARD LENGTH=818 Length=818 Score = 898 bits (486), Expect = 0.0 Identities = 570/610 (93%), Gaps = 8/610 (1%) Strand=Plus/Plus Query 1 ATGTTTTCTCTACGTGATGGAACCCTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT 60 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 98 ATGTTTTCTCCACATGATGGAACACTCTGTTCTAAAAAGAGGGATCATATGAAAGTTTTT 157 Query 61 GGAGAATCGTTTCATGGTTCTTTTAAACGGAGCAAACAAGAAGATCAAACACAAACCAAA 120 ||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||| Sbjct 158 GGAGAATCGTTTCATGGTTCTTTCAAAAGGAGCAAACAAGGAGATCAAAAACAAACCAAA 217 Query 121 CTTGAGAAGAACTCTACTACTCTGGTT-TTTCAAAGATCAAAGTCAGAGAGCGCCATGTT 179 ||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||| Sbjct 218 TTTGAGAAGAACACTACTACTCT-GTTCTTTCAAAGATCAAAGTCAGATAGCGCCATGTT 276 Query 180 GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 GATAAAGCCTGATGTTCAGCTTCACCTAGAGGCTAAGACCCAATCAGAGACATTTGAAGA 336 Query 240 TCATAGGACAGACCTGGACCTTAATTTGAATCTTTCTTCGTCATCAAGTTTCAATATGaa 299 |||||||||||||||||||||||||||||| |||| |||||||||||||| | | | || Sbjct 337 TCATAGGACAGACCTGGACCTTAATTTGAACCTTTATTCGTCATCAAGTTCCTCTGTCAA 396 Query 300 aaaaaCAATCATGGAGAAAGATGAATGTTCGAAAGGAGTATCTTTGATCATGACTACCCC 359 |||||||||||||||||||||||||||||| ||||| | | || ||||||| | | ||| Sbjct 397 AAAAACAATCATGGAGAAAGATGAATGTTCCAAAGGCGGAACTGTGATCAT--C-AGCCC 453 Query 360 AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 AAGTAAGAAGGTGAGATCAGGTGATATAGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTT 513 Query 420 TGAAGGTGATGATGATGATGATAGTCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCAT 479 ||||||||||||||||||| | | ||||||||||||||||||| |||||||||| ||||| Sbjct 514 TGAAGGTGATGATGATGAT-A-A-TCAGAAGAAGCAAGAGATGATAACAACAGTGTGCAT 570 Query 480 GAAGTGTCACATGCTGGTTATGCTCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATT 539 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 571 GAAGTGTCACATGCTGGTTATGCTCTGCAAATCTACTCTTGTCTGTCCTAACTGCAAATT 630 Query 540 CATGCACCAAGATGATCATAGCTCCACAAAACAGTTTAAGACTTTAAATTTGTTTAAGCT 599 ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 631 CATGCACCATGATGATCATAGCTCCACTAAACAGTTTCAGACTTTAAATTTGTTTAAGCT 690 Query 600 CTTGTGCTAG 609 ||| |||||| Sbjct 691 CTTATGCTAG 700 > AT1G78170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29414059-29415094 FORWARD LENGTH=920 Length=920 Score = 204 bits (110), Expect = 1e-51 Identities = 191/229 (83%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 387 AGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTTTGAAGGTGATGATGAT---GATGATAG 443 ||| ||||||||||| || || ||||||||||||||||||| ||||||| |||| | | Sbjct 542 AGGACTAAGTCGATCACCATCCTGGCTAGCGTTTGAAGGTGGTGATGATAACGATG-TTG 600 Query 444 -TCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCATGAAGTGTCACATGCTGGTTATGC 502 ||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 601 ATCACAAGGGGCAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGT 660 Query 503 TCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATTCATGCACCAAGATGATCATAGCT 562 | |||| |||||||| ||| ||||| |||||||| |||||||||| | | ||||| |||| Sbjct 661 TGTGTACATCAACTCCTGTTTGTCCCAACTGCAAGTTCATGCACCCACACGATCACAGCT 720 Query 563 CCACAAAACAGTTTAAGACTTT-AAATTTGTTTAAGCT-CTTGTGCTAG 609 | ||||||| |||||| || | ||||||| ||| ||| || |||||| Sbjct 721 CTACAAAACTGTTTAA-ACCATCAAATTTGCTTAGGCTTCTA-TGCTAG 767 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5