BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336019
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29150.1 | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1... 2023 0.0
AT1G29140.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 750 0.0
> AT1G29150.1 | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10180518-10182703
FORWARD LENGTH=1570
Length=1570
Score = 2023 bits (1095), Expect = 0.0
Identities = 1189/1236 (96%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 631 GAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTTCGATACTGTACCAG 690
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 131 GAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTACGATACTGTACCAG 190
Query 691 GTTTTGGAAGATCCTTCTTCATCTCCAGAGGCTATACGGATCAAGGAGCAAGCGATTACA 750
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 191 GTTTTGGAAGACCCTTCTTCATCTCCTGAGGCTATACGGATCAAGGAGCAAGCGATTACA 250
Query 751 AATCTCTGTGATCGACTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTAACC 810
|| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 251 AACCTTTGTGATCGATTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTGACC 310
Query 811 AAGTTGAGGCCTTTCTTTTCGTTAATCCCCAAGGCGAAAACTGCAAAAATCGTCAGAGGA 870
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 311 AAGTTGAGGCCTTTCTTTTCCTTAATCCCCAAGGCGAAAACTGCGAAAATCGTCAGAGGA 370
Query 871 ATCATTGATGCTGTGGCAAAGATACCTGGAACAACTGATCTCCAGATCACTCTCTGCAAA 930
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 371 ATCATTGATGCTGTGGCAAAGATTCCTGGAACAACTGATCTCCAGATCACTCTCTGCAAA 430
Query 931 GAAATGGTGGAATGGACTCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCT 990
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GAGATGGTCGAATGGACCCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCT 490
Query 991 AGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCACTGTTGAGT 1050
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 491 AGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCGTTGTTGAGT 550
Query 1051 ACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTTGACATAGACTTG 1110
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 551 ACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTCGACATAGACTTG 610
Query 1111 TTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACT 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACT 670
Query 1171 GCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCGGCTCAACAAGGCACCATAGAC 1230
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 671 GCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCAGCTCAACAAGGCACGATAGAT 730
Query 1231 CTGCAGAGTGGGATTCTTCACGCTGAAGAGAAGGACTACAAAACCGGATACAGTTACTTC 1290
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 731 CTGCAGAGTGGGATTCTTCATGCTGAAGAGAAAGACTACAAAACCGGATACAGTTACTTC 790
Query 1291 TTTGAAGCCTTTGAGTCCTTCAATGCTCTCGGAGATCCAAGAGCGGTTTTCAGTTTGAAA 1350
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 791 TTTGAAGCCTTTGAGTCCTTCAACGCTCTCGGAGATCCGAGAGCGGTTTTCAGTTTGAAG 850
Query 1351 TACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCC 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCC 910
Query 1411 TCAAAGGCTGGACTACAATATGTTGGCCCTGACTTGGATGCCATGAAAGCAGTCGCTGAT 1470
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 911 TCAAAGGCTGGACTACAGTACGTTGGCCCTGACCTGGATGCCATGAAAGCAGTCGCTGAT 970
Query 1471 GCTCACTCAAAGAGATCCTTGAAACTGTTTGAGAACGCACTCCGTGACTACAAAGCACAG 1530
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 971 GCTCACTCGAAGAGGTCCTTGAAGTTGTTTGAGAACGCACTCCGTGACTACAAAGCACAG 1030
Query 1531 CTTGAAGATGACCCAATTGTCCACAGGCATCTCTCGTCTCTCTATGACACGCTTTTGGAG 1590
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1031 CTTGAAGATGACCCAATTGTCCACAGGCATCTCTCTTCTCTCTATGACACGCTTCTGGAG 1090
Query 1591 CAAAACCTGTGTCGTTTGATCGAGCCCTTTTCAAGGGTTGAGATAGCGCACATTGCTGAG 1650
||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1091 CAAAATCTGTGTCGTTTGATCGAGCCCTTCTCAAGAGTTGAGATAGCTCACATTGCTGAG 1150
Query 1651 CTGATTGGATTACCGCTCGACCATGTGGAGAAGAAGCTATCTCAGATGATACTGGACAAG 1710
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1151 CTCATTGGATTGCCGCTCGACCATGTGGAAAAGAAGCTATCTCAGATGATACTCGACAAG 1210
Query 1711 AAATTTGCAGGGACATTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAG 1770
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AAATTTGCAGGTACCTTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAG 1270
Query 1771 GCAGATGCTATCTACTCAGCTACTCTCGACACCATTGCAAACATGGGGAAGGTCGTCGAC 1830
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1271 GCAGATGCTATCTACTCGGCTACCCTCGAAACCATTGCAAACATGGGGAAGGTCGTCGAC 1330
Query 1831 AGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA 1866
||||||||||||||||||||||||||||||||||||
Sbjct 1331 AGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA 1366
Score = 100 bits (54), Expect = 4e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 557 TCTTC-TATTTCTTCTCTACCGTCGTCG-AAAGCTTTACCAAAATCTCACGCCCCCGACG 614
||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 13 TCTTCTTATTTCTTCTATACCGTCGTCGAAAAGCTTTACCAAAATCTCACGCCCCCGACG 72
Query 615 ATTC 618
||||
Sbjct 73 ATTC 76
> AT1G29140.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr1:10178902-10180019 FORWARD LENGTH=851
Length=851
Score = 750 bits (406), Expect = 0.0
Identities = 446/466 (96%), Gaps = 0/466 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAATTCTTCATTCTCTTCCTTGCCTCTGCCCTATGTTTCACCACCCTCATTCAC 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 128 ATGGCCAAATTCTTCATTGTCTTCCTTGCCTCTGCCCTATGTTTCACCACCCTCGTTCAC 187
Query 61 TTCACCGCAGCTGATGCTGACGACTTCGACAAATTCCACATCAAGGGCTCCGTCTACTGC 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 188 TTCACCGCAGCTGATGCCGACGACTTTGACAAATTCCACATCAAGGGCTCCGTCTACTGC 247
Query 121 GACACATGCCGTGTCCAATTCATCACCCGTCTTAGCAAGTTCCTCGAAGGGGCAAAGGTA 180
|||||||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||
Sbjct 248 GACACATGCCGTGTCCAATTCATCACCCGTATCAGCAAATTTCTCGAGGGGGCAAAGGTA 307
Query 181 AAGCTTGAGTGCAAGGGCCGTGAGAACCAGACAGTGACACTTACCAAAGAAGCTGTGACC 240
||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 308 AAGCTTGAGTGCAAGGGTCGTGAGAACCAGACAGTGACCCTAACCAAAGAAGCCGTGACC 367
Query 241 GACAACGCCGGAAACTACCAGATGGAAGTAATGGGTGACCACGAAGAGGAAGTGTGCGAG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GACAACGCCGGTAACTACCAGATGGAAGTAATGGGTGACCACGAAGAGGAAGTGTGCGAG 427
Query 301 ATCGTCCTTGTCCAATCACCTGACGCAGAGTGTGGAGAAGTGAACAACCAAGAGTTCCTA 360
|||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 428 ATCGTCCTCCTCCAATCACCTGACCCAGAGTGTGGAGACGTGAACAACCAAGAATTCCTA 487
Query 361 AGAAACGCAGCCAGGATCAGTCTCACGGCCAATGATGGCATTGTCTCCAACGAGACTCGA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGAAACGCAGCCAGAATCAGTCTCACGGCCAATGATGGCATTGTCTCCAACGAGACTCGA 547
Query 421 ACCATTAACCCACTTGGGTTCATGAGGAAGACTCCTCTCGCTGAAT 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ACCATTAACCCACTTGGGTTCATGAGGAAGACTCCTCTCGCTGAAT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92369002800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5