BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg336024 Length=771 Score E Sequences producing significant alignments: (Bits) Value AT3G51870.1 | Symbols: | Mitochondrial substrate carrier famil... 444 7e-124 AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain prote... 204 1e-51 > AT3G51870.1 | Symbols: | Mitochondrial substrate carrier family protein | chr3:19243950-19246936 FORWARD LENGTH=1499 Length=1499 Score = 444 bits (240), Expect = 7e-124 Identities = 276/294 (94%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 476 CTGTTCTTTCGGCTGGTATCGCAACACTCACATGTTACCCTCTACAAACTGTGAGATGGC 535 ||||||| || |||||||| |||||||| ||||||||||||||| | ||||||||| ||| Sbjct 879 CTGTTCTCTCAGCTGGTATTGCAACACTGACATGTTACCCTCTAGACACTGTGAGACGGC 938 Query 536 AAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAAGCATTTGCTCGAATTATAG 595 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 939 AAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAGGCATTTGCTGGAATTATAG 998 Query 596 ACCGTGATGGTCTTATAGGATTGTACCGCGGCTTTTTACCCAATGCATTGAAGACTCTAC 655 |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 999 ACCGTGATGGGCTTATAGGCTTGTACCGCGGCTTTTTACCCAATGCATTGAAAACTCTAC 1058 Query 656 CAAACAGCAGTATTAGGCTTACAACCTTGGACATGGTAAAACGCCTTATCGCCACAAGTG 715 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1059 CAAACAGCAGTATTAGGCTTACAACCTTCGACATGGTAAAGCGCCTTATCGCCACAAGTG 1118 Query 716 AGAAGCAGTTTCAAAAGATCAACGATGATAATGGGAATCGAGAACAAGCTCAAT 769 |||||||| |||||||||||| |||||||||| |||||||||| |||||||||| Sbjct 1119 AGAAGCAGCTTCAAAAGATCAGCGATGATAATCGGAATCGAGACCAAGCTCAAT 1172 Score = 158 bits (85), Expect = 1e-37 Identities = 92/95 (97%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 381 TCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCACATCTTTCTATTACGGTTCTAG 440 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 703 TCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGG-TCTAG 761 Query 441 GACCTTCTCTAGTGGGGATAGCTCCATACATTGCT 475 |||||||||||||||||||||||||||| |||||| Sbjct 762 GACCTTCTCTAGTGGGGATAGCTCCATATATTGCT 796 Score = 137 bits (74), Expect = 1e-31 Identities = 89/96 (93%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 264 AGAG-TGCAATAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCTGGAAGACTT 322 |||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 543 AGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATC-GGAAGACTT 601 Query 323 GCGGCTGGTGCTTGTGCTGTCATGACATCTTCTTTG 358 || |||||||||||||||| |||||||||| ||||| Sbjct 602 GCAGCTGGTGCTTGTGCTGGCATGACATCTACTTTG 637 > AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain protein | chr1:10147693-10149686 FORWARD LENGTH=796 Length=796 Score = 204 bits (110), Expect = 1e-51 Identities = 125/132 (95%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 106 AGAGAAGGGCTTAGCACTAGAAATGCTTCAGGTTCAGAGGAAGTCCAGCTGAGGATTGAT 165 ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 225 AGAGAAGGGCTAAGCACTAGAAATGCTTCAGGTTCAGAGGAAATTCAGCTGAGGATTGAT 284 Query 166 CCTATGCACTCTGACCTTGATGATGAGAT-CATAGGTCTCCATGGCCAGGTCAGGCAATT 224 ||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||| Sbjct 285 CCTATGCACTCTGACCTGGATGATGAGATTC-TAGGTCTCCATGGCCAAGTCAGGCAATT 343 Query 225 GAAAAATATTGC 236 |||||||||||| Sbjct 344 GAAAAATATTGC 355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37474673662 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5