BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336158
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30550.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1131 0.0
> AT1G30550.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:10819554-10823659
REVERSE LENGTH=2047
Length=2047
Score = 1131 bits (612), Expect = 0.0
Identities = 673/703 (96%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 1 ATGACGAGATCGATGAAGCTCAAGAAACGATCGCGCTTGAAGAAAGGA-ATAAAATCAAC 59
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 685 ATGACGAGATCGATGAAGCTCAAGAAACGATCGCGCTTGAAGAAA-GAGGTAAAATCAAC 743
Query 60 GATAAAGAAAGAAAATGGTTCGAGTCATAAGATCACTAAGTACTGGATTCAACGATACGA 119
|||| ||||||| |||||| ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 744 GATAGAGAAAGATAATGGTAGGAGACATAAAATCACTAAGTACTGGATTCAACGTTACGA 803
Query 120 TCTCTTCTCAAGATACGACCAAGGTATCGAATTGGATGAGGAAGGATGGTACTCTGTGAC 179
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 804 TCTCTTCTCAAGATATGACCAAGGTATCGAAATGGATGAAGAAGGATGGTACTCTGTGAC 863
Query 180 TCCTGAAGAAATCGCAATCAAACAAGCTCAGAGATGTCGTGGTAAAGTGGTCATTGATTG 239
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 864 TCCTGAAGAAATCGCAATCAAACAAGCTCAGAGATATCGTGGCAAAGTGGTGATTGATTG 923
Query 240 CTTCTCAGGCGTTGGTGGTAACACTATTCAATTCGCTAAAGTATGTTCTTCTGTTGTTGC 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 924 CTTCTCAGGCGTTGGTGGTAACACTATTCAATTTGCTAAAGTATGTTCTTCTGTTGTTGC 983
Query 300 TATTGACATTGATCCGGTGAAAGTTGAATTGGCGATGAACAATGCAATGGTTTATGGAGT 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 984 TATTGACATTGATCCGGTGAAAGTTGAATTGGCGATGAACAATGCCATGGTTTATGGAGT 1043
Query 360 TGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATCCAATTAGCTCCATCTCTTAAAGG 419
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1044 TGCTAATCGTGTTGATTTTGTCATTGGTGATTTCATACAATTAGCTCCTTCTCTCAAAGG 1103
Query 420 AGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATGTTGAGAGTTA 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1104 AGATGTAGTGTTTCTTTCACCACCATGGGGAGGACCAATGTATAGAGATTTTGAGAGTTA 1163
Query 480 TAAGTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCAT 539
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CAATTTGGATATGCTTCAACCAAGAGACGGGTACTCATTGTTTCAGATTGCTCAGTCCAT 1223
Query 540 TACGCCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCGCAAGTGGAAGAACT 599
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1224 TACACCTAACATCATTATGTTTCTACCGCGAAATGTTGATTTAGCACAAGTGGAAGAACT 1283
Query 600 AGCTTGGCTCTCGTCCCCTCCGCTAACTCTTGAGATAGAAGAAAACTTTGTTGGAGGCAG 659
||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1284 AGCTTGGCTCTCGTCGCCTCCGTTAAATCTTGAGATAGAAGAAAACTTTGTTGGAGGCAG 1343
Query 660 AATGAAAGCCGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG 702
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1344 AATGAAAGCTGTAACAGCTTATTTTAGTTGCAATGCAGTTTAG 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5