BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336541
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31160.1 | Symbols: HINT 2 | HISTIDINE TRIAD NUCLEOTIDE-BIND... 830 0.0
> AT1G31160.1 | Symbols: HINT 2 | HISTIDINE TRIAD NUCLEOTIDE-BINDING
2 | chr1:11122658-11124155 REVERSE LENGTH=835
Length=835
Score = 830 bits (449), Expect = 0.0
Identities = 507/535 (95%), Gaps = 3/535 (1%)
Strand=Plus/Plus
Query 25 ttCAGGAATTTCTCTACGGTGGGAAGAGTTGCTCAGTCTGTTCGTGTGACTTCGAAAATC 84
||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 81 TTC-GGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAGGATC 139
Query 85 TTCTTCTCCACTGGAGAATTGATTAGGGTTCTTCCTTATACCCGTTCCT-CAAGATCCAT 143
||||||||||| ||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct 140 TTCTTCTCCACCGGAGAATTGATTAGGGTTCTTCCTTATACTCGTT-CTAAAAGATTGAT 198
Query 144 CTGTTCTACTCGTGCTGCGCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGC 203
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CTGTTCTACTCGTGCTGCTCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGC 258
Query 204 TGACACCGGAGCTCCAACCATATTTGACAAGATTATAGCAAAAGAGATTCCATCTGATAT 263
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 259 TGACACCGGAGCTCCGACCATATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATAT 318
Query 264 TGTCTATGAAGATGCAAACGTTTTGGCATTCAGAGACATAAACCCTCAGGCTCCTGTTCA 323
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 319 TGTCTATGAAGATGAAAACGTTTTGGCATTCAGAGACATTAACCCTCAGGCTCCTGTTCA 378
Query 324 TGTTTTGGTCATCCCCAAGTTGAGAGATGGCTTAACCACGCTTGGCAATGCTGAACCAAG 383
|||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 379 TGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAGGCTGAACCAAG 438
Query 384 ACACGTAGAGGTTCTTGGCCAACTTCTACACGCATCGAAGATTGTTGCTGAGAAAGAAGG 443
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 439 ACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGATTGTTGCTGAGAAAGAAGG 498
Query 444 CATCCTCGACGGGTTCCGTGTGGTTATCAACAACGGTGTTGAAGCTTGCCAATCTGTTTA 503
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 499 AATCCTTGATGGGTTCCGTGTGGTTATCAACAACGGTGTTGAAGCCTGCCAATCTGTTTA 558
Query 504 CCATCTTCATCTACACGTCCTCGGAGGCCGACAGATGAAATGGCCACCCGGTTAA 558
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CCATCTTCATCTGCACGTCCTCGGAGGCCGACAGATGAAATGGCCACCCGGTTAA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5