BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337119
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49670.2 | Symbols: NQR | ARP protein (REF) | chr1:18380804-... 1973 0.0
> AT1G49670.2 | Symbols: NQR | ARP protein (REF) | chr1:18380804-18386108
REVERSE LENGTH=2833
Length=2833
Score = 1973 bits (1068), Expect = 0.0
Identities = 1200/1265 (95%), Gaps = 4/1265 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGGTCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 ATGGAGATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGGTCGA 147
Query 61 GCTCTCTGCTTAGCTCTTGCGGATAAAGGAGTGTTTGTTACGGTGGTTGATTTTTCGGAG 120
|||||||||||||||||||| || |||||||| ||||| || || | |||||||||||||
Sbjct 148 GCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGCTGATTTTTCGGAG 207
Query 121 GAGAAAGGACAAGAGACTACCTCGCTTGTTCGAAAAGCAAATGCCAAATATCATCCCGGG 180
|||||||||||||||||||| |||||||||||| |||| |||||||| | |||| | |||
Sbjct 208 GAGAAAGGACAAGAGACTACTTCGCTTGTTCGAGAAGCGAATGCCAAGTTTCAT-CAGGG 266
Query 181 -TTAAGCTCTCCTTCTGCTATCTTTGTGAAATGTGATGTCACTAATAGAGGAGATCTCGT 239
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 267 CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGGAGATCTCCT 326
Query 240 GGCTGCTTTCGAGAAGCACTTAGCCACATTTGGAACACTTGACATTTGTATCAACAATGC 299
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 327 CGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTGACATCTGTATCAACAATGC 386
Query 300 TGGGATTAGCACTCCTCTAAGATTTGATAAAGATGACACTGATGGATCTAAATCATGGAA 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TGGGATTAGCACTCCTTTAAGATTTGATAAAGATGACACTGATGGATCTAAATCATGGAA 446
Query 360 ACACACCATTAATGTCGATCTCATTGCAGTAATCCAAGGCACACAACTTGCAATCAAAGC 419
||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||
Sbjct 447 ACACACCATTAATGTCGATCTGATTGCAGTAGTTGAAGGCACACAACTTGCGATCAAAGC 506
Query 420 TATGAAAGCCAAACAAAATCCTGGAGTTATCATTAACATGGGATCAGCTGCGGGTCTTTA 479
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TATGAAAGCAAAACAAAAGCCTGGAGTTATCATTAACATGGGATCAGCTGCGGGTCTTTA 566
Query 480 TCCAATGCCCATTGATCCTATCTACGCTGCCTCTAAAGCCGGTGTCGTATTATTCACTAG 539
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 567 TCCAATGCCCGTTGATCCTATCTATGCTGCCTCTAAAGCCGGTGTCGTATTATTCACTAG 626
Query 540 ATCATTAGCATATTACAGGCGTCAAGGGATCCGCATCAATGTACTTTGCCCTGAATTTAT 599
||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 627 ATCATTAGCATATTACAGGCGCCAGGGGATTCGCATCAATGTGCTTTGCCCTGAATTTAT 686
Query 600 CAAGACAGACTTAGCTGAAGCTATTGATGCTTCAATACTTCAGTCAATAGGTGGTTACAT 659
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 687 CAAGACAGACTTAGCTGAAGCTATTGATGCTTCAATACTAGAGTCAATAGGCGGTTACAT 746
Query 660 GTCTATGGACATGTTAATTAAAGGTGCTTTTGAGCTTATAACCGATGAGAAAAAGGCCGG 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 747 GTCTATGGACATGTTGATTAAAGGTGCTTTTGAGCTTATAACCGATGAGAAAAAGGCGGG 806
Query 720 GGCATGTCTATGGATTACCAACCGCAGAGGTTTGGAGTATTGGCCAACTCCAATGGAAGA 779
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 807 GGCATGTCTATGGATTACCAAACGCAGGGGTTTGGAGTATTGGCCAACTCCAATGGAAGA 866
Query 780 GACAAAGTACTTGGTGGGTTCAAGTTCCAGAAAAAGACCTTCGTTTAAAGTATCTTCCAA 839
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||
Sbjct 867 GACAAAGTACTTGGTGGGTTCAAGTTCCAGGAAAAGACCTTCTTTTAAAGTTTCTACAAA 926
Query 840 AATTGAACTTCCTCAAAGCTTCGAGAAAATAATTGTACACACCTTGTCTCATAAATTCCG 899
||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 927 AATAGAATTTCCTCAAAGCTTCGAGAAAATGATTGTACACACCTTGTCTCACAAATTCCG 986
Query 900 CAACGCTACCCGCATAGTCCGTGCACCACTAAAATTACCCATTGGACCACACCAAGTTCT 959
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 987 CAGTGCTACCCGCATAGTCCGTGCACCACTACAATTACCCATTGGACCACACCAAGTTCT 1046
Query 960 CCTGAAAATCATCTATGCTGGTGTTAACGCAAGTGATGTAAACTTCAGCTCAGGTCGTTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 CCTGAAAATCATCTATGCTGGTGTTAACGCAAGTGATGTAAACTTCAGCTCAGGTCGTTA 1106
Query 1020 CTTTAGC-GGCGGCTCACCGAAGCTTCCCTTTGATGCTGGGTTTGAGGGAGTTGGACTAA 1078
||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1107 CTTTA-CTGGTGGCTCCCCGAAGCTTCCCTTTGATGCTGGATTTGAGGGAGTTGGACTAA 1165
Query 1079 TAGCAGCAGTAGGAGAATCTGTTAAGAATTTGGAAGTTGGGACTCCAGCTGCTGTTATGA 1138
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TTGCAGCAGTGGGAGAATCTGTTAAGAATTTGGAAGTTGGGACTCCAGCTGCTGTTATGA 1225
Query 1139 CATTTGGAGCATATTCTGAATACATGATAGTATCTTCTAAGCATGTGCTTCCTGTTCCGA 1198
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1226 CGTTTGGAGCATATTCTGAATACATGATAGTATCTTCTAAGCATGTTCTTCCTGTTCCAA 1285
Query 1199 GACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTG 1345
Query 1259 AAAAG 1263
|||||
Sbjct 1346 AAAAG 1350
Score = 1002 bits (542), Expect = 0.0
Identities = 612/643 (95%), Gaps = 15/643 (2%)
Strand=Plus/Plus
Query 1262 AGGCAGGACAAATGAAATCAGGTGAAACAGTACTTGTGACTGCTGCTGCAGGAGGGACTG 1321
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1418 AGGCAGGACAAATGAAATCAGGTGAAACTGTACTTGTGACTGCTGCTGCAGGAGGGACTG 1477
Query 1322 GACAATTTGCAGTCCAGAGATTCTCTATGCAGCTTGCAAAGTTAGCAGGAAATAAAGTGA 1381
|||||||| | | || || ||||||||||||||| |||||||||||||||
Sbjct 1478 GACAATTT---G--C--AG----TC----CAGCTTGCAAAGTTATCAGGAAATAAAGTGA 1522
Query 1382 TTGCTACTTGCGGGGGATCAGAGAAGGCCAAGCTATTGAAAGAGCTCGGGGTCGATCGAG 1441
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1523 TTGCTACTTGCGGGGGATCAGAGAAGGCCAAGCTATTGAAAGAGCTTGGGGTCGATCGAG 1582
Query 1442 TCATAGACTACAAATCCGAGAATATCAAGACTGTCTTGAAAAAAGAGTTTCCAAAGGGTG 1501
||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 1583 TCATAGACTACAAATCCGAGAATATAAAGACGGTCTTGAAAAAGGAGTTTCCGAAGGGTG 1642
Query 1502 TGGATATCATCTATGAATCTGTAGGTGGTCAAATGTTTGACATGTGCTTGAATGCTCTTG 1561
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TAAATATCATCTATGAATCTGTAGGTGGTCAAATGTTTGACATGTGCTTGAATGCTCTTG 1702
Query 1562 CTGTTTACGGAAGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAGAAGGGAT 1621
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CTGTTTACGGACGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAGAAGGGAT 1762
Query 1622 GGGAACCCGCAAAATATCCAGGGCTCTGCGAGAAACTTTTAGCAAAAAGCCAAACCGTGG 1681
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1763 GGGAACCTGCAAAATATCCAGGGCTCTGCGAGAAAATTTTAGCAAAAAGCCAAACCGTGG 1822
Query 1682 CTGGTTTCTTTCTGGTGCAATACAGTCAACTGTGGAAACAAAATCTTGACAAGTTATTCA 1741
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1823 CTGGTTTCTTTCTGGTGCAATATAGTCAACTGTGGAAACAAAATCTTGACAAGTTGTTCA 1882
Query 1742 ATCTTTACTCTCTCGGAAAGCTTAAGGTTGGGATTGATCAGAAAAAGTTTATAGGTCTAA 1801
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1883 ATCTTTACGCTCTCGGAAAGCTCAAGGTTGGGATTGATCAGAAAAAGTTTATAGGTCTAA 1942
Query 1802 ATGCTGTAGCAGATGCTGTTGAATATCTGCATTCGGGTAAAAGCACCGGAAAGGTTGTCG 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 ATGCTGTAGCAGATGCTGTTGAATATCTGCATTCGGGTAAAAGCACCGGAAAGGTTGTCG 2002
Query 1862 TTTGCATTGATCCCGCATTTGAGCAGAAAACGTCGAGACTGTA 1904
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 TTTGCATTGATCCCGCATTTGAGCAGAAAACGTCGAGACTGTA 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5