BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg337633 Length=1041 Score E Sequences producing significant alignments: (Bits) Value AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1... 1520 0.0 > AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1:20729182-20731283 REVERSE LENGTH=1650 Length=1650 Score = 1520 bits (823), Expect = 0.0 Identities = 985/1060 (93%), Gaps = 23/1060 (2%) Strand=Plus/Plus Query 1 ATGGAAGAAGCAATTGCAACGAGGTATTGGTGTCACATGTGCTCTCAAACTGTGGATCCA 60 |||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| ||||| Sbjct 305 ATGGAAGAAGCAGTTGTAACGAGGTATTGGTGTCATATGTGTTCTCAAACTGTGAATCCA 364 Query 61 GTCATGGAAGCTGAGATCAAATGCCCCTTTTGTCAAAGTGGGTTTGTTGAAGAGATGG-A 119 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 365 GTCATGGAAGCTGAGATCAAATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATGGAA 424 Query 120 -A-GACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCTAACAACTCTCTTTGG 177 | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 425 GATGACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCAAACAACTCTCTTTGG 484 Query 178 GCTCCTATCTTGATGGAACTTATGACTGATCCTGTGCGCCGTAGGAGAAACCAGAGTGTT 237 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 485 GCGCCTATCTTGATGGAACTTATGAATGATCCTGTGCGTCGTAGGAGAAACCAGAGTGTT 544 Query 238 GAGTCTGTTGAAGATAATCAAAACGAGGCACAGACCGAGAGTAATGAAAACAACGGTGAA 297 |||||||||||||||||||||||||||| ||||||||||| |||| || ||| || | Sbjct 545 GAGTCTGTTGAAGATAATCAAAACGAGGTACAGACCGAGAACAATG--AA-GACGATGGA 601 Query 298 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCTGCT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 602 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCCGCT 661 Query 358 GCTGTTTTGCAATTGCTTCAGGGGATACGAGCTGGCTTGTCTGTAGAATCTGAGAGTACT 417 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 662 GCTGTTTTGCAGTTGCTTCAGGGGATACGAGCAGGGTTGTCTGTAGAATCTGAGAGTACT 721 Query 418 GGTAATGGAGATAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 477 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GGTAATGGAGGTAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 781 Query 478 ACGGTTCAAAGCTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 537 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 ACGGTTCAAAACTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 841 Query 538 ATTGGGCCTGGATTTGAAATGTTGCTTCAGCGTCTAGCTGAGAATGATCCCAACAGATAT 597 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 842 ATTGGTCCTGGATTTGAAATGTTGCTTCAACGTCTAGCTGAGAATGATCCCAACAGATAT 901 Query 598 GGGACACCTCCAGCTAAAAAAGAAGCTGTTGAGGCTTTGGGTACTGTGAAAATTGAAGAG 657 || |||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| Sbjct 902 GGAACACCTCCTGCTAAAAAAGAAGCTGTCGAGGCTTTGGCTACTGTGAAAATCGAAGAG 961 Query 658 ACTCTGCAGTGTTCGGTTTGCTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCGGATG 717 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 962 ACTCTGCAATGTTCGGTTTGTTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCTGATG 1021 Query 718 CCCTGTGA-GCACAAGTTTCATGGTGACTGCCTGTTACCATGGCTTGAGCTTCACAGTTC 776 |||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1022 CCCTGT-ACGCACAAGTTTCATAGTGACTGCTTGTTACCATGGCTTGAGCTTCACAGTTC 1080 Query 777 ATGCCCTGTTTGCAGATATCAGTTACCTGCAGATGAACCCAAGACTGACTCAGTAACAAC 836 |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 1081 ATGCCCGGTTTGCAGATATCAGTTACCTGCAGATGAAGCCAAGACTGATTCAGTAACAAC 1140 Query 837 AACAAGTGATAACAATGGAGGCAGTGGTGCTCCTGCTACAAGCAGCCATGGAGCTGAGAA 896 ||| || |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||| Sbjct 1141 AACGAGCGATAACAATGGAAGCAGTAGTGCTTCTGCTACAACCAGCCATGGAGCTGAGAA 1200 Query 897 CAGC-A-GG---C-G-C-C-AAG--GA-GAAGAAGAAGA-G--GAGGACGCGGAGGAGGA 941 |||| | || | | | | ||| || ||||||||||| | ||||| | ||||||||| Sbjct 1201 CAGCGATGGAAACCGGCGCCAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGA 1260 Query 942 GAACGAGGACAATGATGGAAGCGGATTCTCGATCCCATGGCCGTTTAGCACTTTGTTCAC 1001 ||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||| | Sbjct 1261 GAACGAGAACAATGACGGAAGCGGATTCTCGATCCCGTGGCCGTTTAGCACCTTGTTCTC 1320 Query 1002 CTCGTCCCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1041 |||||| ||||||||||||||||||||||||||||||||| Sbjct 1321 CTCGTCGCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51037893352 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5