BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg337713
Length=2169
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54350.1 | Symbols: | ABC transporter family protein | chr1... 3360 0.0
AT1G54355.1 | Symbols: | other RNA | chr1:20288804-20290316 RE... 627 2e-178
> AT1G54350.1 | Symbols: | ABC transporter family protein | chr1:20286882-20290401
FORWARD LENGTH=2312
Length=2312
Score = 3360 bits (1819), Expect = 0.0
Identities = 1999/2084 (96%), Gaps = 20/2084 (1%)
Strand=Plus/Plus
Query 90 ttcttcttcGCTTCGCCATGAATCA---ATCGGAAACTTTCATCGGAAGAAAATTCCACG 146
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 89 TTCTTCTTTGCTTCGCCATGAATCATCGATCGGAAACTTTCATCGGAAGAAAAATCCACG 148
Query 147 TTTCAGAACCGTATCCTCTTCTTCTTTGTTACCGCAACCGTCGGTTCGTCCGGATAAGGC 206
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 149 TTTCAGAACCGTATCATGTTCTTCTTTGTTGCCGCAACCGTCGGTTCGTCCGGATAAGGC 208
Query 207 ATCGGAGTTAAAGACTCTGTGGAAGAAATTCTACAAAGTCGCGTCGCCTTATTGGTTTTC 266
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ATCGGAGTTGAAGACTCTGTGGAAGAAATTCTACAAAGTCGCGTCGCCTTATTGGTTTTC 268
Query 267 CGAGGACAAAGACCAAGCCAGGCTTCGTCTCGCTGCCGTCTTCGCCCTAACTCTCGCCAC 326
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 269 CGAGGACAAAGACCAAGCCAGGCTTCGTCTCGCCGCCGTCTTCGCCCTTACTCTCGCCAC 328
Query 327 CACCGGCATTAGCGTCGGCTTCAATTTCCTTGGCCGTGATTTCTACAATTCTCTCGCCAA 386
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 329 CACCGGCATTAGCGTCGGCTTCAATTTCCTCGGCCGTGATTTCTACAATTCTCTCGCCAA 388
Query 387 CAAAGACCAAGAGCAATTCACGAAGCAGTTGTTCTATTACCTCTGTGCTTTCGCCGGCGG 446
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 389 CAAAGACCAAGAGCAATTCACCAAGCAGTTGTTCTATTACCTCTGTGCTTTCGCCGGCGG 448
Query 447 GATTCCGTTCTTTGTGCTAAGAGATTATACAAAAGAGACTTTATCACTGAGATGGAGATC 506
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CATTCCGTTCTTTGTGCTACGAGATTATACAAAAGAGACTTTATCACTGAGATGGAGATC 508
Query 507 ATGGATGACCAAATATTACCTGCAGCGTTATCTGAAAGATCAAACCTTTTACAAGATCCA 566
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 509 ATGGATGACCAAATATTACCTGCAGCGCTATCTCAAAGATCAAACCTTTTACAAGATCCA 568
Query 567 GTCTCAGTCTATGATTGACAATCCAGATCAGCGCATTGTTGACGATTTGAGTTCCTTCAC 626
|||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 569 GTCTCAGTCTATCATCGACAATCCTGATCAGCGCCTTGTTGACGATTTGAGTTCCTTCAC 628
Query 627 TGGAACTGCCCTGTCTTTCTCTTTGACGCTTGTCAATGCCACCATTGACCTCATCTCTTT 686
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 629 TGGAACTGCCTTGTCTTTCTCTTTGACGCTTGTTAATGCCACCATTGATCTCATCTCTTT 688
Query 687 TAGCAACATCCTCTTCACCATTTATCCTCCTCTCTTTCTCGTTCTCTTGCTCTACTCCTT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TAGCAACATCCTCTTCACCATTTATCCTCCTCTCTTTCTCGTTCTCTTGCTCTACTCCTT 748
Query 747 TGGCGGAACAGCCATCAGTGTCTTTCTTGGCAAGGGATTAGTCAATCTCAACTTTCTACA 806
|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 749 TGGCGGTACAGCCATCAGTGTCTTTCTTGGCAAGGGACTAGTGAATCTCAACTTTCTACA 808
Query 807 AGAGAAGAAAGAGGCTGACTTTCGTTATAGCCTTGTACGAGTGAGGGAAAATGCTGAATC 866
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 809 AGAGAAGAAAGAGGCTGACTTTCGTTACAGCCTTGTACGAGTGAGGGAAAATGCTGAATC 868
Query 867 CATAGCTTTCTATGGAGGCGAACAGAATGAAATGCAGCTTCTGCTTCAGCGTTTCAGAAG 926
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TATTGCTTTCTATGGAGGCGAACAGAATGAAATGCAGCTTCTGCTTCAGCGTTTCAGAAG 928
Query 927 CGCTTTTGATAATTTAACTGAATTGCTGATAGCATCCAGAAACCTAGAATTCTTCACCGA 986
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 929 CGCTTTTGATAATTTAACTGAATTGCTGATAGCATCTAGAAACCTAGAATTCTTCACCGA 988
Query 987 TGGATATCGCTACCTCATTCAGATTCTTCCAGTTGCTGTTGTTGCCCCAATGTATTTCTC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 TGGATATCGCTACCTCATTCAGATTCTTCCAGTTGCTGTTGTTGCCCCAATGTATTTCTC 1048
Query 1047 CGGGAAGATTGAGTTTGGTGTCATTAACCAGTCAGTGTCAGCATTCAATCATATCCTAGG 1106
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1049 CGGGAAGATTGAGTTTGGTGTCATTAACCAGTCAGTGTCTGCATTCAATCATATCCTAGG 1108
Query 1107 AGACTTCTCGCTCGTTGTTTATCAGTTTCAAGCTATCAGCTCTTTTTCTGCTGTCATTGA 1166
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 AGACTTCTCGCTCGTTGTCTATCAGTTTCAAGCTATCAGCTCTTTTTCTGCTGTCATTGA 1168
Query 1167 TCGACTAGGTGAATTTGATGATCTTTTGGATAACAACATCTTCAGAGATCCCTCTGGCAC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1169 TCGACTAGGTGAATTTGATGATCTTTTGGATAACAACATCTTCAGAGATCCATCTGACAC 1228
Query 1227 TGTGGACGAGATTGAGCTAACGTATCAGAGTGAGATGAACTCTTCACTGCTGGACACCAA 1286
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TGTGGACGAGATTGAGCTGACATATCAGAGTGAGATGAACTCTTCACTGCTGGACACCAA 1288
Query 1287 TGGTTCAATCAAGTCCCAACTGAACCAAAAGCGTCTGGAGATCGAGGAGCTTACTCTTCA 1346
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TGGTTCAATCAAGTCCCAACCGAACCAAAAGCGTCTGGAGATCGAGGAGCTTACTCTTCA 1348
Query 1347 AACACCAACAAATGGAACCACATTGGTTCACAACTTATCTGTGGATATATATGACAAGGA 1406
||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1349 GACACCAACAAACGGAACCACATTGGTTCACAACTTATCTGCAGATGTATATGACAAGGA 1408
Query 1407 TCATCTACTGATAATGGGTCCTAGTGGGAGTGGTAAAACTTCGCTGCTAAGAGCAATGGC 1466
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1409 TCACCTACTGATAATGGGTCCTAGTGGGAGTGGAAAAACTTCGCTGCTAAGAGCAATGGC 1468
Query 1467 TGGTCTTTGGAGGTCAGGGAAAGGAAAAATCACGTTCTACCTCGATTCTGAGG-ATGATT 1525
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1469 TGGTCTTTGGAGGTCAGGGAAAGGAAAAATCACGTTCTACCTCGATCCTGAGGTA-GATT 1527
Query 1526 TTACACAGGAGGAATCTAATACTCAGGAAAATTCAGAGAAAAGAAGTTCGGGAAACGTAT 1585
||||||||||| ||||| |||||||||||||||||| ||||||| | | || |||||
Sbjct 1528 TTACACAGGAGAAATCTGATACTCAGGAAAATTCAGGGAAAAGA-G---GAGA--CGTAT 1581
Query 1586 TGTTCCTTCCACAAAGGCCTTATATGGTTCTGGGATCGTTGCGTCAGCAATTGCTTTATC 1645
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1582 TGTTCCTTCCACAAAGGCCTTATATGGTTCTGGGATCTTTGCGTCAGCAATTGCTTTATC 1641
Query 1646 CTACCTGGAGTGCAACTGTGGAGGAGGCGACACCTGGTGGCAGTAATATAGACGGTTCAC 1705
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1642 CTACCTGGAGTGCAACTGTGGAGGAGACGACACCTGGTGGCAGTAATATTGACGGTTCAC 1701
Query 1706 CACCTCTCCTGATTAGAGAAGACGGAAATGAAAAGTGTAATAAGCCGACAACAGATGATC 1765
||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1702 CACCTCTGCTGATTAGAGAGGACGGAAATGAAAAG---------CCGACAACAGATGATC 1752
Query 1766 TGATGCAGACTCTAGAGAAGGTTTGTCTTGGACATATAGCGGATCGCTTTGGTGGTCTTG 1825
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 TGATGCGGACTCTAGAGAAGGTTTGTCTTGGACATATAGCGGATCGCTTTGGTGGTCTTG 1812
Query 1826 ATTCGATACACGAGTGGTCCAGTGTTCTTTCACTTGGTGAGCAGCAGCGCCTCGCCTTTG 1885
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1813 ATTCGATACACGAGTGGTCCAGTGTTCTCTCACTTGGTGAGCAGCAGCGCCTTGCCTTTG 1872
Query 1886 CACGGTTATTGCTTTCTCAGCCAAAGCTGGCGCTCCTGGATGAATCCACCAGTGCGTTGG 1945
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 CACGGTTATTGCTGTCTCAGCCAAAGCTGGCGCTCCTGGATGAATCCACCAGTGCGTTGG 1932
Query 1946 ATGAAGCTAATGAGGCGCTCCTGTACCAGCAAATCCAGTCGGCTGGCATTACATATATAA 2005
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 ATGAAGCTAATGAGGCGTTCCTGTACCAGCAAATCCAGTCGGCTGGCATTACATATATAA 1992
Query 2006 GCATTGGCCACCGCCGGACTTTAACGAAATTCCATAACAAGATCTTACAAATCTCAACGG 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GCATTGGCCACCGCCGGACTTTAACGAAATTCCATAACAAGATCTTACAAATCTCAACGG 2052
Query 2066 CAGACCCGAAGAGCAAGGAACGTAACTGGCGTATAGAGGACGCAGATGCCCAAGATTGTT 2125
|||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||
Sbjct 2053 CAGACCCGAAGAGCAATGAACGTAACTGGCGAATAGAGGACGTGGATGCCCAAGATTCTT 2112
Query 2126 TGTATGGTCGATTGAATCAAGAGGAGGTGCCAAGTGAAAGCTGA 2169
|||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 2113 TGTACGGTAGATTGAATCAAAAGGAGGTGCCAAGTGAAAGCTGA 2156
Score = 60.2 bits (32), Expect = 8e-08
Identities = 57/67 (85%), Gaps = 9/67 (13%)
Strand=Plus/Plus
Query 1 ATGATTTTGATGATAACAGCTCCCGTTTTCGCCACTTGTCCTCCTCACCTTCTCCTCCGC 60
|||||||||||||||||||||||||||| | | ||||||||||||||||| |||
Sbjct 36 ATGATTTTGATGATAACAGCTCCCGTTT--G----T---CCTCCTCACCTTCTCCTACGC 86
Query 61 CATTCTT 67
|||||||
Sbjct 87 CATTCTT 93
> AT1G54355.1 | Symbols: | other RNA | chr1:20288804-20290316
REVERSE LENGTH=1235
Length=1235
Score = 627 bits (339), Expect = 2e-178
Identities = 485/546 (89%), Gaps = 47/546 (9%)
Strand=Plus/Minus
Query 1416 GATAATGGGTCCTAGTGGGAGTGGTAAAACTTCGCTGCTAAGAGCAATGGCTGGTCTTTG 1475
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 742 GATAATGGGTCCTAGTGGGAGTGGAAAAACTTCGCTGCTAAGAGCAATGGCTGGTCTTTG 683
Query 1476 GAGGTCAGGGAAAGGAAAAATCACGTTCTACCTCGATTCTGAGGAT-GATTTTACACAGG 1534
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 682 GAGGTCAGGGAAAGGAAAAATCACGTTCTACCTCGATCCTGAGG-TAGATTTTACACAGG 624
Query 1535 AGGAATCTAATACTCAGGAAAATTCAGAGAAAAGAAGTTCGGGAAACGTATTGTTCCTTC 1594
|| ||||| |||||||||||||||||| |||||| | ||| |||||||||||||||
Sbjct 623 AGAAATCTGATACTCAGGAAAATTCAGGGAAAAG-A-----GGAGACGTATTGTTCCTTC 570
Query 1595 CACAAAGGCCTTATATGGTTCTGGGATCGTTGCGTCAGCAATTGCTTTATCCTACCTGGA 1654
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 569 CACAAAGGCCTTATATGGTTCTGGGATCTTTGCGTCAGCAATTGCTTTATCCTACCT--- 513
Query 1655 GTGCAACTGTGGAGGAGGCGACACCTGGTGGCAGTAATATAGACGGTTCACCACCTCTCC 1714
| | | || || | | || |||| || |||| | | ||||||| |
Sbjct 512 G-G--A--GT-------GC-A-A-CT-GTGG-AG-----GAGAC-G---A-CACCTCTGC 480
Query 1715 TGATTAGAGAAGACGGAAATGAAAAGTGTAATAAGCCGACAACAGATGATCTGATGCAGA 1774
|||||||||| ||| | | ||| || || ||||||||||||||||||||||||| ||
Sbjct 479 TGATTAGAGAGGAC-G----G-AAA-TG-AA-AAGCCGACAACAGATGATCTGATGCGGA 429
Query 1775 CTCTAGAGAAGGTTTGTCTTGGACATATAGCGGATCGCTTTGGTGGTCTTGATTCGATAC 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CTCTAGAGAAGGTTTGTCTTGGACATATAGCGGATCGCTTTGGTGGTCTTGATTCGATAC 369
Query 1835 ACGAGTGGTCCAGTGTTCTTTCACTTGGTGAGCAGCAGCGCCTCGCCTTTGCACGGTTAT 1894
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 368 ACGAGTGGTCCAGTGTTCTCTCACTTGGTGAGCAGCAGCGCCTTGCCTTTGCACGGTTAT 309
Query 1895 TGCTTTCTCAGCCAAAGCTGGCGCTCCTGGATGAATCCACCAGTGCGTTGGATGAAGCTA 1954
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TGCTGTCTCAGCCAAAGCTGGCGCTCCTGGATGAATCCACCAGTGCGTTGGATGAAGCTA 249
Query 1955 ATGAGG 1960
||||||
Sbjct 248 ATGAGG 243
Score = 390 bits (211), Expect = 3e-107
Identities = 233/244 (95%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1173 AGGTGAATTTGATGATCTTTTGGATAACAACATCTTCAGAGATCCCTCTGGCACTGTGGA 1232
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1062 AGGTGAATTTGATGATCTTTTGGATAACAACATCTTCAGAGATCCATCTGACACTGTGGA 1003
Query 1233 CGAGATTGAGCTAACGTATCAGAGTGAGATGAACTCTTCACTGCTGGACACCAATGGTTC 1292
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CGAGATTGAGCTGACATATCAGAGTGAGATGAACTCTTCACTGCTGGACACCAATGGTTC 943
Query 1293 AATCAAGTCCCAACTGAACCAAAAGCGTCTGGAGATCGAGGAGCTTACTCTTCAAACACC 1352
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 942 AATCAAGTCCCAACCGAACCAAAAGCGTCTGGAGATCGAGGAGCTTACTCTTCAGACACC 883
Query 1353 AACAAATGGAACCACATTGGTTCACAACTTATCTGTGGATATATATGACAAGGATCATCT 1412
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 882 AACAAACGGAACCACATTGGTTCACAACTTATCTGCAGATGTATATGACAAGGATCACCT 823
Query 1413 ACTG 1416
||||
Sbjct 822 ACTG 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107579767935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5