BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg338326

Length=1083
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60500.1 | Symbols: DRP4C | Dynamin related protein 4C | chr...   782    0.0   
  AT1G60505.1 | Symbols:  | other RNA | chr1:22294677-22297220 RE...   484    6e-136
  AT1G60510.1 | Symbols: DRP4D | pseudogene, putative interferon-...   344    1e-93 
  AT1G60520.1 | Symbols:  | pseudogene, putative interferon-induc...   195    1e-48 


> AT1G60500.1 | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293964 
FORWARD LENGTH=2152
Length=2152

 Score =  782 bits (423),  Expect = 0.0
 Identities = 758/920 (82%), Gaps = 22/920 (2%)
 Strand=Plus/Plus

Query  87    TGAAGCACCAATTGTATCTTCTTACAATGACCGGATCAGGCCGTTACTTGATACTGTCGA  146
             ||||||||| ||| ||||||| || || || ||||| |||||||| ||||| ||||| ||
Sbjct  93    TGAAGCACCGATTATATCTTCATATAACGATCGGATAAGGCCGTTGCTTGACACTGTGGA  152

Query  147   TAGGCTGAGAAACTTGAATGTGATGAAAGAAGGGATCCAGCTTCCCACCATTGTCGTGGT  206
              || || || ||| | ||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct  153   CAGACTTAGGAACCTCAATGTCATGAGAGAAGGGATCCATCTTCCCACCATTGTCGTGGT  212

Query  207   TGGAGACCAGTCTTCGGGGAAGTCAAGTGTTCTTGAGTCCTTGGCCGGAATCAGTTTACC  266
             |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  213   TGGAGACCAGTCCTCAGGGAAGTCAAGTGTTCTTGAATCCTTGGCAGGAATCAGTTTACC  272

Query  267   TCGTGGGCAAGGAATATGCACTAGGGTTCCTCTTGTGATGAGACTCCAGAGAAG-TCTTA  325
             |||||| |||||||| |||||||||||||||||||| ||||| || ||| |||| ||| |
Sbjct  273   TCGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGAGGCTTCAGCGAAGCTCT-A  331

Query  326   GTCCTGAACCTGAGATCTGGCTTGAGT-TCAATGACAAAAGAG-TTGATACTGACGAGGA  383
             | |||||||||||||| |||||||||| | || |||||| | | ||  ||| ||||||||
Sbjct  332   GCCCTGAACCTGAGATTTGGCTTGAGTAT-AACGACAAA-GTGGTTCCTACGGACGAGGA  389

Query  384   ACATATAGCTGAAGCTATTAG--CATCACAACTGAGGCAATTGCTGGATCTGGTAA-GGG  440
             ||| || |||||||||||| |  | |  |||| || |  ||||||||||||||||| |||
Sbjct  390   ACACATCGCTGAAGCTATTCGTGC-TG-CAACAGATGTGATTGCTGGATCTGGTAAAGGG  447

Query  441   CGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTTCCTGAT-TTGACAA  499
              ||||||||| ||||  ||||||| ||||| ||||||  ||||||||| ||  || || |
Sbjct  448   -GTCTCAGATGCTCCATTGACCCTCCATGTGAAGAAGGCTGGTGTTCCAGACCTT-ACGA  505

Query  500   TGGTTGATCTCCCCGGTATAACCCGTGTTCCCGTGAATGGACAGCCAGAAAACATCTATG  559
             |||| ||||| ||||||||||| || ||||| |||||||||||||| ||||| || ||||
Sbjct  506   TGGTCGATCTTCCCGGTATAACTCGAGTTCCAGTGAATGGACAGCCGGAAAATATTTATG  565

Query  560   AACAAATCTCTGGGATGATAATGAAGTACATCGAGCCACAAGAATCCATCATCCTCAATG  619
             | || |||||||||||||| ||| ||||||| ||||| |||||||| || ||||||||||
Sbjct  566   AGCAGATCTCTGGGATGATTATGGAGTACATTGAGCCTCAAGAATCAATAATCCTCAATG  625

Query  620   TCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCCGTATGTCTCGACAAGTTG  679
             | ||||||||||| |||||||||||||| || |||||||| || |||||| || ||||||
Sbjct  626   TTCTGTCAGCTACGGTCGACTTCACCACATGCGAATCCATTCGCATGTCTAGAAAAGTTG  685

Query  680   ACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGCTGACATGGCTCCTGAAGGTC  739
             ||||||| ||  ||||||| || ||||| |||||||| || |||||||||||||||||||
Sbjct  686   ACAAAACCGGTCAACGGACACTAGCTGTTGTGACAAAGGCAGACATGGCTCCTGAAGGTC  745

Query  740   TCCTAG-AGAAAGTAA-TGGCAGACGACGTGAGTATTGGACTAGGTTACGTCTGTGTAAG  797
             || | | ||||||||| || |||| || ||||||||||  || |||||||| || || ||
Sbjct  746   TCTT-GCAGAAAGTAACTG-CAGATGATGTGAGTATTGTTCTTGGTTACGTGTGCGTCAG  803

Query  798   GAACCGTGTAGGTGATGAGACATATCAAGAAGCTAGGATGCATGAAGAATTACTTTTCAA  857
              |||||  | || || ||||||||| ||||||| |||||||| ||||| |||||||||| 
Sbjct  804   AAACCGCATTGGAGAAGAGACATATGAAGAAGCAAGGATGCAAGAAGAGTTACTTTTCAG  863

Query  858   GACTCATCCATTGCTTTCTATGATTGACCATGACATTGTAGGTATCCCGGTTTTAGCTAA  917
             ||| |||||| ||||   | | |||||  | ||||| || || ||||| || |||||| |
Sbjct  864   GACCCATCCAGTGCTAAGTTTAATTGATGAAGACATAGTGGGAATCCCTGTGTTAGCTCA  923

Query  918   GAAATTGATGCAGATCCAGGGAA-CAATGATTGCTCGTTGCTTGCCTGATATCGTTCAG-  975
             |||  | ||||  |||||   || || |||||||| | || |||||| | || ||  || 
Sbjct  924   GAAGCTAATGCTTATCCAATCAAGCA-TGATTGCTAGATGTTTGCCTAAAATTGTA-AGC  981

Query  976   AAGATCAAAGAGAAGATGGA  995
             ||||||||  ||||| ||||
Sbjct  982   AAGATCAACCAGAAGTTGGA  1001


> AT1G60505.1 | Symbols:  | other RNA | chr1:22294677-22297220 
REVERSE LENGTH=1928
Length=1928

 Score =  484 bits (262),  Expect = 6e-136
 Identities = 481/585 (82%), Gaps = 21/585 (4%)
 Strand=Plus/Minus

Query  88    GAAGCACCAATTGTATCTTCTTACAATGACCGGATCAGGCCGTTACTTGATACTGTCGAT  147
             |||||||| ||| ||||||| || || ||  |||| |||||||| ||||| || || || 
Sbjct  1784  GAAGCACCGATTATATCTTCATATAACGATAGGATTAGGCCGTTGCTTGACACGGTTGAC  1725

Query  148   AGGCTGAGAAACTTGAATGTGATGAAAGAAGGGATCCAGCTTCCCACCATTGTCGTGGTT  207
              | || || ||| | |||||||||| |||||| || ||||||||||||||||||||||||
Sbjct  1724  CGTCTAAGGAACCTCAATGTGATGAGAGAAGGCATTCAGCTTCCCACCATTGTCGTGGTT  1665

Query  208   GGAGACCAGTCTTCGGGGAAGTCAAGTGTTCTTGAGTCCTTGGCCGGAATCAGTTTACCT  267
             ||||||||||| ||||||||||||||||| || || || ||||| ||||||||| |||||
Sbjct  1664  GGAGACCAGTCCTCGGGGAAGTCAAGTGTCCTCGACTCGTTGGCAGGAATCAGTCTACCT  1605

Query  268   CGTGGGCAAGGAATATGCACTAGGGTTCCTCTTGTGATGAGACTCCAGAGAAG-TCTTAG  326
             ||||| |||||||| |||||||||||||||||||| ||| |||| ||| |||| ||| ||
Sbjct  1604  CGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGCGACTTCAGCGAAGCTCT-AG  1546

Query  327   TCCTGAACCTGAGATCTGGCTTGAGTTCAATGACAAAAGAGTTGATACTGACGAGGAACA  386
              |||| ||||||||| |||||||||| || |||||| |  |||   || || ||||| ||
Sbjct  1545  CCCTGTACCTGAGATATGGCTTGAGTACAGTGACAAGATTGTTCCCACGGATGAGGAGCA  1486

Query  387   TATAGCTGAAGCTAT-TAGCATCACAACTGAGGCAATTGCTGGATCTGGTAA-GGGCGTC  444
              || ||||||||||| | |  |  | | | |  |  | || |||||||| || ||| |||
Sbjct  1485  CATCGCTGAAGCTATCT-G--TG-CTA-T-A--C--T-GCAGGATCTGGCAAAGGG-GTC  1438

Query  445   TCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTTCC-TGAT-TTGACAATGG  502
             |||||  ||||  ||||||| ||||||||||||  ||| || || | || || || ||||
Sbjct  1437  TCAGACGCTCCATTGACCCTCCATGTTAAGAAGGCTGGGGTCCCAT-ATCTT-ACCATGG  1380

Query  503   TTGATCTCCCCGGTATAACCCGTGTTCCCGTGAATGGACAGCCAGAAAACATCTATGAAC  562
             | ||||| ||||||||||| || |  || ||||||||||| || || || || || ||||
Sbjct  1379  TCGATCTTCCCGGTATAACTCGAGG-CCAGTGAATGGACAACCGGAGAATATTTACGAAC  1321

Query  563   AAATCTCTGGGATGATAATGAAGTACATCGAGCCACAAGAATCCATCATCCTCAATGTCC  622
             | || ||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct  1320  AGATTTCTGGGATGATCATGAAGTACATCGAGCCACAAGAATCAATAATCCTCAATGTTC  1261

Query  623   TGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCCGTATGT  667
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1260  TGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCCGTATGT  1216


> AT1G60510.1 | Symbols: DRP4D | pseudogene, putative interferon-induced 
GTP-binding protein mx, blastp match of 42% identity 
and 8.3e-35 P-value to GP|1399454|gb|AAC60215.1||U47946 RBTMx3 
{Oncorhynchus mykiss} | chr1:22294722-22297139 FORWARD 
LENGTH=2418
Length=2418

 Score =  344 bits (186),  Expect = 1e-93
 Identities = 456/581 (78%), Gaps = 39/581 (7%)
 Strand=Plus/Plus

Query  423   TGCTGGATCTGG-TAAGGGCGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATG  481
             ||| ||||||||  ||||| ||||||||  ||||  ||||||| ||||||||||||  ||
Sbjct  919   TGCAGGATCTGGCAAAGGG-GTCTCAGACGCTCCATTGACCCTCCATGTTAAGAAGGCTG  977

Query  482   GTGTTCC-TGAT-TTGACAATGGTTGATCTCCCCGGTATAACCCGTGTTCCCGTGAATGG  539
             | || || | || || || ||||| ||||| ||||||||||| || |  || ||||||||
Sbjct  978   GGGTCCCAT-ATCTT-ACCATGGTCGATCTTCCCGGTATAACTCGAG-GCCAGTGAATGG  1034

Query  540   ACAGCCAGAAAACATCTATGAACAAATCTCTGGGATGATAATGAAGTACATCGAGCCACA  599
             ||| || || || || || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct  1035  ACAACCGGAGAATATTTACGAACAGATTTCTGGGATGATCATGAAGTACATCGAGCCACA  1094

Query  600   AGAATCCATCATCCTCAATGTCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCAT  659
             |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1095  AGAATCAATAATCCTCAATGTTCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCAT  1154

Query  660   CCGTATGTCTCGACAAGTTGACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGC  719
             ||||||||   || |      |      ||  | |    |||||| || || || || ||
Sbjct  1155  CCGTATGT---GA-A------C------GG--A-C----TCTGGCCGTTGTCACCAAGGC  1191

Query  720   TGACATGGCTCCTGAAGGTCTCCTAGAGAAAGTAA-TGGCAGACGACGTGAGTATTGGAC  778
              ||||||||||| |||||||||||| ||||||||| || | || || ||||||||||| |
Sbjct  1192  AGACATGGCTCCCGAAGGTCTCCTACAGAAAGTAACTG-CGGATGATGTGAGTATTGGTC  1250

Query  779   TAGGTTACGTCTGTGTAAGGAACCGTGTAGGTGATGAGACATATCAAGAAGCTAGGATGC  838
             |||||||||||||||| || |||||  | || || ||| | ||| || ||||||| ||||
Sbjct  1251  TAGGTTACGTCTGTGTCAGAAACCGCATTGGAGAAGAG-CGTATGAACAAGCTAGAATGC  1309

Query  839   ATGAAGAATTACTTTTCAAGACTCATCC-ATTGCTTT-CTATGATTGACCATGACATTGT  896
             | ||||| || || |||| |||||| || || |||   || |||||||  | ||||| ||
Sbjct  1310  AAGAAGAGTTGCTCTTCAGGACTCACCCGAT-GCTGAGCT-TGATTGATGAAGACATCGT  1367

Query  897   AGGTATCCCGGTTTTAGCTAAGAAATTGATGCAGATCCAGGGAACAATGATTGCTCGTTG  956
              || ||||| ||| ||||| ||||  | ||||  ||||| | ||| |||||| | || ||
Sbjct  1368  GGGAATCCCTGTTATAGCTCAGAAGCTAATGCTTATCCAAGCAACGATGATTTCCCGCTG  1427

Query  957   CTTGCCTGATATCGTTCAG-AAGATCAAAGAGAAGATGGAA  996
              |||||||| ||||||| | ||||||||  | |||||||||
Sbjct  1428  TTTGCCTGAAATCGTTC-GCAAGATCAATCACAAGATGGAA  1467


 Score =  287 bits (155),  Expect = 2e-76
 Identities = 262/315 (83%), Gaps = 2/315 (1%)
 Strand=Plus/Plus

Query  88   GAAGCACCAATTGTATCTTCTTACAATGACCGGATCAGGCCGTTACTTGATACTGTCGAT  147
            |||||||| ||| ||||||| || || ||  |||| |||||||| ||||| || || || 
Sbjct  100  GAAGCACCGATTATATCTTCATATAACGATAGGATTAGGCCGTTGCTTGACACGGTTGAC  159

Query  148  AGGCTGAGAAACTTGAATGTGATGAAAGAAGGGATCCAGCTTCCCACCATTGTCGTGGTT  207
             | || || ||| | |||||||||| |||||| || ||||||||||||||||||||||||
Sbjct  160  CGTCTAAGGAACCTCAATGTGATGAGAGAAGGCATTCAGCTTCCCACCATTGTCGTGGTT  219

Query  208  GGAGACCAGTCTTCGGGGAAGTCAAGTGTTCTTGAGTCCTTGGCCGGAATCAGTTTACCT  267
            ||||||||||| ||||||||||||||||| || || || ||||| ||||||||| |||||
Sbjct  220  GGAGACCAGTCCTCGGGGAAGTCAAGTGTCCTCGACTCGTTGGCAGGAATCAGTCTACCT  279

Query  268  CGTGGGCAAGGAATATGCACTAGGGTTCCTCTTGTGATGAGACTCCAGAGAAG-TCTTAG  326
            ||||| |||||||| |||||||||||||||||||| ||| |||| ||| |||| ||| ||
Sbjct  280  CGTGGCCAAGGAATCTGCACTAGGGTTCCTCTTGTCATGCGACTTCAGCGAAGCTCT-AG  338

Query  327  TCCTGAACCTGAGATCTGGCTTGAGTTCAATGACAAAAGAGTTGATACTGACGAGGAACA  386
             |||| ||||||||| |||||||||| || |||||| |  |||   || || ||||| ||
Sbjct  339  CCCTGTACCTGAGATATGGCTTGAGTACAGTGACAAGATTGTTCCCACGGATGAGGAGCA  398

Query  387  TATAGCTGAAGCTAT  401
             || |||||||||||
Sbjct  399  CATCGCTGAAGCTAT  413


> AT1G60520.1 | Symbols:  | pseudogene, putative interferon-induced 
GTP-binding protein mx, blastp match of 52% identity and 
3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB 
protein {Danio rerio} | chr1:22297973-22298736 FORWARD LENGTH=764
Length=764

 Score =  195 bits (105),  Expect = 1e-48
 Identities = 327/427 (77%), Gaps = 43/427 (10%)
 Strand=Plus/Plus

Query  427  GGATCTGGTAAGGGCGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTT  486
            ||||||||||| || || ||| | |||||| | || || ||||| ||||||  || ||||
Sbjct  372  GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT  431

Query  487  CCTGAT-TTGACAATGGTTGATCTCCCCG-GTATAACCCGTGTTCCCGTGAATGGACAGC  544
            |||||| || ||| ||||||||||||| | | ||||| || |||||||||||||||||| 
Sbjct  432  CCTGATCTT-ACATTGGTTGATCTCCCTGAG-ATAACTCGAGTTCCCGTGAATGGACAGA  489

Query  545  CAGAAAACATCTAT--GAACAAATCT-CTGGGATGATAATGAAGTACATCGAGCCACAAG  601
            |  |||||||| ||  ||| |||||| |  || |||| |||||||||||| ||||||| |
Sbjct  490  CTCAAAACATCCATGCGAA-AAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATG  547

Query  602  AATCCATCATCCTCAATGTCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCC  661
            ||||||||||||||||||| ||| |||| ||||| || ||   || |     |   |  |
Sbjct  548  AATCCATCATCCTCAATGTTCTGCCAGCGACAGTTGA-TT--TCA-C-----A---A--C  593

Query  662  GTATGTCTCGACAAGTTGACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGCTG  721
             | ||  | |   |    |||||||||||||||||||||||||||| || ||||| | ||
Sbjct  594  -T-TG--T-G---A----ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTG  641

Query  722  ACATGGCTCCTGAAGGTCTCCTAGA-GAAAGTAA-TGGCAGACGACGTGAGTATTGGACT  779
            |||||||| ||||||| ||| | || |||||| | || |||| || |||||||| ||| |
Sbjct  642  ACATGGCTACTGAAGGGCTCGT-GAAGAAAGTTACTG-CAGATGAGGTGAGTATCGGAAT  699

Query  780  AGGTTACGTCTGTGTAAGGAACCGTG-TAGGTGATGAGA-CATATCAAGAAGCTAGGATG  837
             ||||| || ||||| || ||||| | |||| || || | | | | |||||||| | |||
Sbjct  700  TGGTTATGTATGTGTTAGAAACCG-GATAGGGGAGGAAATCTT-TGAAGAAGCTCGTATG  757

Query  838  CATGAAG  844
             | ||||
Sbjct  758  GAAGAAG  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53061976065


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5