BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg338601
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65090.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1085 0.0
> AT1G65090.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G36100.1);
Has 1234 Blast hits to 904 proteins in 178 species: Archae
- 0; Bacteria - 58; Metazoa - 431; Fungi - 95; Plants -
83; Viruses - 38; Other Eukaryotes - 529 (source: NCBI BLink).
| chr1:24180830-24183199 REVERSE LENGTH=1418
Length=1418
Score = 1085 bits (587), Expect = 0.0
Identities = 682/726 (94%), Gaps = 13/726 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAATATCAGTCTAATGAGAGTGAAGACAAAAGAAGTTGGATTTGGAGTAAGGCG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 148 ATGGAGGAATATCAGTCTAATGAGAGTGAAGATAAAAGAAGTTGGATTTGGAGTAAGGCG 207
Query 61 GTAAGCGTTGGGAAGAAGGTTCTGACAGCTGGTGTTATAGTGTCTTCAGCTCCACTTCTT 120
||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 208 GTAAGTGTTGGGAAGAAAGTTCTGACAGCTGGTGTTGTAGTGTCTTCAGCTCCACTTCTT 267
Query 121 GTTCCTTCACTTTTTGTCGCCTCGACTA-TCGCCTTCCTCTCCTCGGTTCCTTTTTGTTT 179
|||||||||||||||||||||||||| | | |||||||||||||||||||| |||||| |
Sbjct 268 GTTCCTTCACTTTTTGTCGCCTCGAC-ACTTGCCTTCCTCTCCTCGGTTCCGTTTTGTCT 326
Query 180 CTTCTTGGCTAATTATGCTTGTACACAAAAGGTCATGAGTACTCTGCTTCCTGATACTGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 CTTCTTGGCTAATTATGCTTGTACACAAAAGGTCATGAGTACTCTGCTTCCTGATACTGA 386
Query 240 AGAAACAGGTGGAGTTGAC-A--AGGATGATGATGAATCTAGATTTGATGAGTACAGCAA 296
|||||| |||||||||| | | |||||||||| |||||| ||||||||||||| |||||
Sbjct 387 AGAAACTGGTGGAGTTGGCAAGGAGGATGATGACGAATCTGGATTTGATGAGTATAGCAA 446
Query 297 GATTGGTCACCGTGAAGGTGCGGCTGAAGTTGGTGAGGGTGCACTTTTCATGGGTACGGA 356
|||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct 447 GATTGGTCACGGTGAAGGCGCGGCTGGAGTTGGTGAGGCTGCACTTTTCAGGGGTAAAGA 506
Query 357 AGAACCCATTCCCATTCAGGTTAAGGAAGATGAGGAGATGGTGAAAGAGTCAACGAGCTT 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 507 AGAACCCATTCCCATTCAGGTTAAGGAAGATGAGGAGATGGCGAAAGAGTCAACGAGCTT 566
Query 417 GCTAGAGAAAATTAGGGATGAGGGTAGAACTGACAGAGAAACCTCTGAGAAAGAA--TTA 474
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 567 GCTAGAGAAAATTAGGGATGAGGGTAGAACTGACAAAGAAACCTCTGAG--AGAACTTTA 624
Query 475 CAAGATGATAAAAATTCCGGAAATGCCAAGTCAGAGGAGGTTCAAGAACAGCCTGAAAAG 534
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 625 CAAGATGATAAAAAGTCCGGAAATGCTAAGTCAGAGGAGGTTCAAGAACAGCCTGAAAAG 684
Query 535 CGGGAAGCGCCTGAGACTGGACGTGAAGGGG-AACTTGGGGCCACAAAAACTGAAACTTC 593
|||||||||||||||||| |||||||||||| ||| |||||| ||||||| |||||||||
Sbjct 685 CGGGAAGCGCCTGAGACTAGACGTGAAGGGGAAAC-TGGGGCTACAAAAATTGAAACTTC 743
Query 594 AACGGGCAAGGATGACGAGGAAACT-TCTTCGAATGAGCCGATAGACCAAGCTAGTGGGG 652
||||||||||| || ||||||| | ||||| |||||||| |||||||||||||||||||
Sbjct 744 TACGGGCAAGGACGATGAGGAAA-TATCTTCTAATGAGCCAATAGACCAAGCTAGTGGGG 802
Query 653 CACAAGGAACCGGGgaagagaaacgaaaaaacacaactaagaaaaagaagaaaacCGGGC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CACAAGGAACCGGGGAAGAGAAACGAAAAAACACAACTAAGAAAAAGAAGAAAACCGGGC 862
Query 713 GTGCAG 718
||||||
Sbjct 863 GTGCAG 868
Score = 381 bits (206), Expect = 7e-105
Identities = 248/268 (93%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 717 AGCTAGTGTC-AAA-G-TCCAAATATGTATGGCTTTGGATTTGCAGGTGTATAGTGAAGA 773
|||||||||| ||| | || ||||||||||| |||| ||||||||||||||||||| ||
Sbjct 1008 AGCTAGTGTCAAAATGAGCCGAATATGTATGGTTTTGAATTTGCAGGTGTATAGTGAGGA 1067
Query 774 GCAAATATGGGAGAAGATGGAGACGTTGAGGAAGGTAGTAGGATACAGTGTTGCAAGCAG 833
|||| ||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1068 GCAACTATGGGAGACGATGGAGACTTTGAGGAAAGTAGTAGGATACAGTGTTGCAAGGAG 1127
Query 834 TGCCACATGCGCAGAGGAGTTAAAGGCTCTCTATGTCTTCACCGGCGTGGTGGAGCCACC 893
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1128 TGCCACATGTGCAGAGGAGTTAAAGGCTCTCTATGTCTTCACCGGTGTAGTGGAGCCACC 1187
Query 894 TCACTCAAGCTTAAACCATGACACTCATGATATCGCACATCTTACTATTAGACTTCGCTT 953
|| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1188 TCGCTCAAGCTTAAACCAGGACACTTATGATATTGCACATCTTACTATTAGACTTCGCTT 1247
Query 954 CCTCATGTCTGTTATCGGAATAAACTAG 981
||||||||||||||||||||||||||||
Sbjct 1248 CCTCATGTCTGTTATCGGAATAAACTAG 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5