BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339371
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71360.1 | Symbols: | Galactose-binding protein | chr1:2689... 3014 0.0
AT1G22882.1 | Symbols: | Galactose-binding protein | chr1:8098... 924 0.0
> AT1G71360.1 | Symbols: | Galactose-binding protein | chr1:26892100-26894802
REVERSE LENGTH=2313
Length=2313
Score = 3014 bits (1632), Expect = 0.0
Identities = 1890/2010 (94%), Gaps = 36/2010 (2%)
Strand=Plus/Plus
Query 11 GAGACGAGGTAGATCGTCGGAATTTCATCGACCGGGTTTCATTAGATCGGAGACTCATCG 70
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 207 GAGACGAGGTAGATCGTCGGAATTTCATCGACCGGGTTTCATTAGATCGGATACTCATCG 266
Query 71 GAGACGTCGGCGTTGAAAAGGGTTTTGTCACGGAGAAGGTTCCCGAATCTTCTTCTTCCT 130
||||||||| |||||||||||||||||| ||| |||| | | |||| ||| |
Sbjct 267 GAGACGTCGCCGTTGAAAAGGGTTTTGTTACGAAGAA-G----C----CTTC--CTT--T 313
Query 131 TCGGTTTGTCTTCTTCAATCTCCGATTCGCTTCTCA-GT-TTATACA--AT-TT-TGCTT 184
||||||||||||| |||||| ||||||||||||||| || | | ||| || || | ||
Sbjct 314 TCGGTTTGTCTTCCTCAATCACCGATTCGCTTCTCAGGTGTGA-ACAGTATATTAAGTTT 372
Query 185 TAG-TT-GTGAATCTGATGTGCA-TCGTT--A--TG-AA--C--AGATCACGGAGAGCTC 232
| | || ||| ||||||| | | | ||| | || || | ||||||||||||||||
Sbjct 373 TTGTTTGGTG-ATCTGATCT-TATTGGTTGGATGTGAAATGCAAAGATCACGGAGAGCTC 430
Query 233 TTCTGGTTAGAAGAAGAGTTTCTGAGACTACTTCTAATGGAAGGAATCGATTCTACAAAG 292
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 431 TTCTGGTTAGAAGAAGAGTTTCTGAGACTACTTCTAATGGAAGGAATCGCTTCTACAAAG 490
Query 293 TTTCATTGTCTCTGGTTTTTCTCATATGGGGTCTTGTCTTCTTATCTACATTGTGGATCA 352
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 TTTCATTGTCTTTGGTTTTTCTCATATGGGGGCTTGTCTTCTTATCTACATTGTGGATCA 550
Query 353 GTCATGTTGATGGAGACAAAGGTAGATCTTTAGTGGATTCAGTTGAAAATGGTGAACCAG 412
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 551 GTCATGTTGATGGTGACAAAGGTAGATCTTTAGTGGATTCAGTTGAAAAAGGTGAACCGG 610
Query 413 ATGATGAAAGGGCAGATGAGACAGCTAAGCCTGTTGATGCACCATCACTAGAGTCTGCCT 472
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 611 ATGATGAAAGGGCAGATGAGACAGCTGAGTCTGTTGATGCAACATCACTAGAGTCTACCT 670
Query 473 CTGTTCATTCTACTCCT-GATTTGAGTCCGGATGTTGATATAGCTGCAGCCGGAGAAATT 531
|||||||||||| |||| || |||||| |||||||||||||||||||||||||||||| |
Sbjct 671 CTGTTCATTCTAATCCTGGA-TTGAGTTCGGATGTTGATATAGCTGCAGCCGGAGAAAGT 729
Query 532 GAAGGCTCAGAAACCATATTGAAGAAAATAGAAGTCGATAACACAATCGTTATCGCAGGA 591
|||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||
Sbjct 730 AAAGGCTCAGAAACCATCTTGAAGCAATTAGAAGTCGATAACACAATCGTTATCGTAGGA 789
Query 592 AACGTTACAGAAAGCAAAGACATTGAGTCTATGAAGGAAAGTGAGATAAATAATAACACA 651
|| ||||||||||||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 790 AATGTTACAGAAAGCAAAGACAACGTGCCTATGAAGCAAAGTGAGATAAATAATAACACA 849
Query 652 GTTCCAGGGGATGATACAGAGACCACTGGTTCAAAGCTTGATCAGCTATCTCGTGCTGTT 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GTTCCAGGGAATGATACAGAGACCACTGGTTCAAAGCTTGATCAGCTATCTCGTGCTGTT 909
Query 712 CCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCTATTTCTAGAGACAAATCTTTGTCA 771
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 910 CCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCCAATTCTAGAGACAAATCTTTGTCA 969
Query 772 GGCCAAGTCACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAATTATGCA 831
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GGCCAAGTAACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAATTATGCA 1029
Query 832 GCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGCTTCAAGC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGCTTCAAGC 1089
Query 892 ATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACCGAAGGAAAGTTC 951
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1090 ATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACTGAAGGGAAGTTC 1149
Query 952 GTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAAATTTCGAG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAAATTTCGAG 1209
Query 1012 CATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGCACCTTGGTTTACCCGACTGAT 1071
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1210 CATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGGACCTTGGTTTACCCAACTGAT 1269
Query 1072 ACGTGGGTTCATCTAGGGAACTTCACGGCTTTAAACATGAAGCACGAGCAGAACTTTACA 1131
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1270 ACGTGGGTTCATCTAGGGAATTTCACGGCTTTAAACATGAAGCACGAGCAGAACTTTACA 1329
Query 1132 CTTGTAGATCCCAAATGGGTGAGATATCTAAAGCTAAACCTGCTAAGCCATTACGGTTCA 1191
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1330 TTTGCAGATCCCAAATGGGTGAGATATCTAAAGCTAAACTTGCTAAGCCATTACGGTTCA 1389
Query 1192 GAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCTGTGGAGCGAATG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCTGTGGAGCGAATG 1449
Query 1252 CTGGAGGATTTGATATCAATCCAAGACAAGAACATATTGAAACCCCAAGAAGGAAACACT 1311
||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1450 CTGGAGGATTTGATATCTATCCAAGACAAGAACATATTGAAACTCCAAGAAGGAGACACT 1509
Query 1312 GAGCAGAAAGAGAAGAAGACAATAAAAGCAAAAGAGTCCTTTGAAAGCGATGAAGACAAG 1371
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1510 GAGCAGAAAGAGAAGAAGACAATGCAAGCAAAAGAGTCCTTCGAAAGCGATGAAGACAAG 1569
Query 1372 AGTAAACAGAAGGAGAAGGAACAAGAAGCCTCACCAGAGAATGCGGTTGTGAAAGATGAA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 AGTAAACAGAAGGAGAAGGAACAAGAAGCCTCACCAGAGAATGCGGTTGTGAAAGATGAA 1629
Query 1432 GTATCAATTGAGAGAAGAAAGCTGCCAGATCCGGTGGAAGAGATAAAACATCAACCAGGA 1491
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 GTATCACTTGAGAAAAGAAAGCTGCCAGATCCGGTGGAAGAGATAAAACATCAACCAGGA 1689
Query 1492 AGCAGAATGCCGGGGGACACTGTCCTGAAGATACTGATGCAGAAGATAAGGTCGCTGGAC 1551
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1690 AGCAGAATGCCGGGGGACACTGTCTTGAAGATACTGATGCAGAAGATAAGGTCGCTGGAC 1749
Query 1552 GTGAGCTTATCAGTTCTTGAGAGTTACTTGGAGGAGCGGAGCTCGAAATACGGGATGATA 1611
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1750 GTGAGCTTATCAGTTCTTGAGAGTTACTTGGAGGAACGGAGCTTGAAATACGGGATGATA 1809
Query 1612 TTCAAGGAGATGGACGTGGAGGCGAGCAagagagagaaggaggtggagactatgagactg 1671
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 TTCAAGGAGATGGACCTGGAGGCGAGCAAGAGAGAGAAGGAGGTGGAGACTATGAGACTA 1869
Query 1672 gaggtagcgggaatgaaggagagcgaagagagTACGAAGAAGGAGGCCATGGAGATGAGG 1731
||||||| |||||||||||||| ||||||| ||||||||| ||||| |||||||||||
Sbjct 1870 GAGGTAGAAGGAATGAAGGAGAGGGAAGAGAATACGAAGAAAGAGGCGATGGAGATGAGA 1929
Query 1732 GGGTGGCGTaggagagtggagacagagcttgagaaggctgagaatgagaaagagaaagtg 1791
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 AAGTGGCGGATGAGAGTGGAGACAGAGCTTGAGAAGGCTGAGAATGAGAAAGAGAAAGTG 1989
Query 1792 aaggagaggttagagCAAGTGTTGGAAAGAATGGAGTGGATGGAGAAGAAAGGTGTGGTT 1851
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1990 AAGGAGAGGTTAGAGCAAGTGTTGGAAAGACTGGAGTGGATGGAGAAGAAAGGTGTGGTT 2049
Query 1852 GTGTTCACAATCTGTGTCGGGTTTGGGGCTATAGCAGTTGTAGCCGTGGTTCTTGGTAAA 1911
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2050 GTGTTCACAATCTGTGTCGGGTTTGGGACTATAGCAGTTGTAGCCGTGGTTTTTGGTATG 2109
Query 1912 GGGACAGGTCGAGCAGAGAAGCCAGGTGGCTTGGCTTGGCTTCTGTTATTGATAAGCTCG 1971
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2110 GGGATAGTTCGAGCAGAGAAGCAAGGTGGCTTGGCTTGGCTTCTGTTATTGATAAGCTCC 2169
Query 1972 ACATTCGTTCTGTTCATTTTGTCTCTTTGA 2001
||||||||| ||||||||||||| ||||||
Sbjct 2170 ACATTCGTTATGTTCATTTTGTCACTTTGA 2199
> AT1G22882.1 | Symbols: | Galactose-binding protein | chr1:8098767-8101351
FORWARD LENGTH=2317
Length=2317
Score = 924 bits (500), Expect = 0.0
Identities = 1155/1462 (79%), Gaps = 82/1462 (6%)
Strand=Plus/Plus
Query 587 CAGGAAACGTTACAGAAAGCAAAGACATTGAG-TCTATGAAGGAAAGTGAGATAAATAAT 645
|||| || | ||||||||||| |||| |||| ||| || || ||| | |||| || |
Sbjct 760 CAGGGAATGATACAGAAAGCAGTGACAATGAGTTCT-TGGAGCAAAATCAGATGAA-CA- 816
Query 646 AACACAGTTCCAGGGGATGATACAGAGA-CCACTGGTTCAAAGCTTGATCAGCTATCTCG 704
|| |||||| |||| ||| ||| |||| | || | ||||||| ||||||| | ||||||
Sbjct 817 AA-ACAGTTTTAGGGAATGGTACCGAGATCAAC-GTTTCAAAGGTTGATCAACCATCTCG 874
Query 705 TGCTGTTCCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCTATTTCTAGAGACAAATC 764
||| |||||||||||||||||||||||||||||||||||||| | |||| || |||||||
Sbjct 875 TGCGGTTCCGCTTGGCCTTGATGAGTTCAAGAGCAGAGCGTCCAATTCTCGAAACAAATC 934
Query 765 TTTGTCAGGCCAAGTCACTGGCGTTATTCATAGGATGGAGCCTGGTGGGAAAGAGTACAA 824
|| |||| || |||| ||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 935 GTTATCAGATCAGGTCAGTGGTGTGATTCACAGGATGGAGCCTGGAGGGAAAGAGTACAA 994
Query 825 TTATGCAGCTGCTTCAAAAGGTGCAAAGGTCTTATCTTCTAACAAGGAAGCAAAAGGAGC 884
||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| || ||
Sbjct 995 TTATGCATCTGCTTCAAAAGGCGCAAAGGTCTTGTCTTCCAACAAGGAAGCAAAGGGGGC 1054
Query 885 TTCAAGCATCATATGCCGGGACAAAGACAAGTATCTCCGAAACCCGTGTTCTACCGAAGG 944
| |||||||| || || ||||||| |||||||| ||| |||| || |||||||| |||||
Sbjct 1055 TGCAAGCATCCTAAGCAGGGACAATGACAAGTACCTCAGAAATCCTTGTTCTACTGAAGG 1114
Query 945 -AAAGTTCGTTGTCATAGAACTTTCAGAAGAAACGTTGGTGAACACAATCAAGATTGCAA 1003
||| || ||||| ||||||||||||||||||| ||||| || || |||||||| || |
Sbjct 1115 TAAATTT-GTTGTTGTAGAACTTTCAGAAGAAACTTTGGTAAATACCATCAAGATCGCGA 1173
Query 1004 ATTTCGAGCATTACTCTTCCAATCTGAAGGATTTTGAGATTTTGGGCACCTTGGTTTA-C 1062
|||| ||||||||||||||||||||||| || |||||| || |||||| | ||||| |
Sbjct 1174 ATTTTGAGCATTACTCTTCCAATCTGAAAGAGTTTGAGCTTCAAGGCACCCTAGTTTATC 1233
Query 1063 CCGACTGATACGTGGGTTCATCTAGGGAA-CTTCACGGCTTTAAACATGAAGCACGAGCA 1121
|| |||||||| ||||||||| | ||||| ||||||||||| |||| ||||||| |||||
Sbjct 1234 CC-ACTGATACCTGGGTTCATAT-GGGAAACTTCACGGCTTCAAACGTGAAGCATGAGCA 1291
Query 1122 GAACTTTACACTTGTAGATCCCAAA-TGGGTGAGATATCT-AAAGCTAAACCTGCTAAGC 1179
|||||| |||||| | || || ||| ||||||||||| || |||||||||| | | ||
Sbjct 1292 GAACTTCACACTTCTTGAGCC-AAAGTGGGTGAGATA-CTTAAAGCTAAACTTTATTAGT 1349
Query 1180 CATTACGGTTCAGAATTCTACTGCACCTTGAGTTTACTAGAAGTCTATGGAGTGGACGCT 1239
||||| |||||||||||||||||||||||||||||| |||||||||| || ||||| ||
Sbjct 1350 CATTATGGTTCAGAATTCTACTGCACCTTGAGTTTAATAGAAGTCTACGGTGTGGATGCC 1409
Query 1240 GTGGAGCGAATGCTGGAGGATTTGATATCAATCCAAGACAAGAACA-T--ATTGAAACCC 1296
|| || ||||||||||||||||||||||| |||| ||||| || | | || ||||||
Sbjct 1410 GTAGAACGAATGCTGGAGGATTTGATATCTGTCCAGGACAACAAAAATGCATACAAACCC 1469
Query 1297 CAAGAAGGAAACACTGAGCAGAAAGAGAAGAAGACAATAAAAGCAAA-AGAGTC-CTTTG 1354
| ||||||| | ||||||| || | || |||| |||| | ||||| |||||| ||| |
Sbjct 1470 CGAGAAGGAGATTCTGAGCATAA-G-GA-GAAGCCAATGCA-GCAAATAGAGTCACTT-G 1524
Query 1355 AAAGCGATGAAGA--CAAGAGTAA-A-CA-G-A-AG-GAGAAGGAACAAG-AAGCCTCAC 1405
|| ||||||| | | || ||| | || | | || ||||| || ||| ||||| |||
Sbjct 1525 AAGGCGATGATGGTGCT-GA-TAAGAGCACGCACAGAGAGAAAGAG-AAGGAAGCCCCAC 1581
Query 1406 CAGAGAATGCGGTT-GTGAAAGA-TGAAGTATCAATTGAGA-GA--AG-AA-A-GCTGCC 1457
|||||||| | || | ||| || ||||| |||||| | || || || || | |||| |
Sbjct 1582 CAGAGAATATG-TTAGCGAA-GACTGAAGCATCAATGGCGAAGAGTAGTAATAAGCTGTC 1639
Query 1458 AGATCCGGTGGAAGAGATAAAACATCA--A-CCAGGAAGCAGAATGCCGGGGGACACTGT 1514
||| || ||||||||||| | ||||| | ||||| ||||||||||| |||||||| ||
Sbjct 1640 AGAGCCCGTGGAAGAGATGAGGCATCATCAGCCAGGGAGCAGAATGCCAGGGGACACAGT 1699
Query 1515 CCTGAAGATACTGATGCAGAAGATAAGGTCGCTGGACGTGAGCTTATC-AGTTCTTGAGA 1573
||||||||||||||||||||| ||||||| ||||| ||| | |||| | |||| ||||
Sbjct 1700 ACTGAAGATACTGATGCAGAAGTTAAGGTCATTGGACTTGAACCTATCGA-TTCTAGAGA 1758
Query 1574 GTTACTTGGAGGAGCGGAGC-TCGAAATACGGGATGATATTCAAGGAGATGGAC-GTGGA 1631
| ||||| ||||| | || | | || |||||||| |||||||||||||||||| ||| |
Sbjct 1759 GATACTTAGAGGAACTGAACCT-GAGATACGGGAACATATTCAAGGAGATGGACCGTGAA 1817
Query 1632 GGCGAGCAagagagagaaggaggtggagactatgagactggaggtagcgggaatgaagga 1691
| || | |||||| |||| | | | | || ||||||| || | | || ||||||||
Sbjct 1818 GCCG-GTGTGAGAGAAAAGGCGATTGTGGCTTTGAGACTTGACTTGGAAGGTATGAAGGA 1876
Query 1692 gag-cgaagagagTACGAAGAAG-GAGGCC-ATGGAGATGAGGGGGTGGCGTaggagagt 1748
|| | ||||| | | | || | || || | |||||||| | |||||| | ||||||
Sbjct 1877 AAGGC-AAGAGGGGATGGTGA-GTGAAGCAGA-GGAGATGAAAGAGTGGCGAAAGAGAGT 1933
Query 1749 ggagacagagcttgagaaggctgagaatgagaaagagaa-agtgaagg-agagg-ttaga 1805
|||| ||||| | ||||| || ||||| ||||| || || | | ||| |||| || ||
Sbjct 1934 GGAGGCAGAGATGGAGAAAGCAGAGAAAGAGAAGGAAAACA-T-AAGACAGAGTCTT-GA 1990
Query 1806 gCAAGTGTTGGAAA-GAATGGAGTGGATGGAGAAGAAAGG-TGTGGTTGTGTTCACAATC 1863
|||||| | ||| || | |||||||||||||||||| | | | || ||||| |
Sbjct 1991 GCAAGTAA-GTAAAAGACTTGAGTGGATGGAGAAGAAATGCT-TAACGGTTTTCACCGTA 2048
Query 1864 TGTGTCGGGTTTGGGGCTATAGCAGTTGTAGCCGTGGTTCTTGGTAAAGGGA-CAGGTCG 1922
||| | |||||||| ||| || ||| | || || || |||||| |||| | ||||
Sbjct 2049 TGTCTAGGGTTTGGCATTATTGCGGTTATTGCAGTTGTGATTGGTAT-GGGAACTGGTCT 2107
Query 1923 AGCAGAGAAG-CCAGGTGGCTTGG-CTTGGCTTCT-GTTATTGATAAGCTCGACATTCGT 1979
|||||||||| || ||| | | || ||||||| || ||||||||| ||||| |||||| |
Sbjct 2108 AGCAGAGAAGACC-GGTAG-TGGGGCTTGGCT-CTTGTTATTGATTAGCTCAACATTCAT 2164
Query 1980 TCTGTTCATTTTGTCTCTTTGA 2001
| ||||| ||||||||||||||
Sbjct 2165 TATGTTCGTTTTGTCTCTTTGA 2186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99146076375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5