BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339588

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73885.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   628    1e-179


> AT1G73885.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast; 
Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27786864-27787708 
FORWARD LENGTH=579
Length=579

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 386/409 (94%), Gaps = 0/409 (0%)
 Strand=Plus/Plus

Query  220  GAACAGCCGGAAGAGGGAAACGGTGGGTACGACGGCGAAAACCCGCCGTCTCAGATCGAA  279
            ||||||| ||||||||||||||  || |  |||||||| |||||||||||||||||||  
Sbjct  124  GAACAGCAGGAAGAGGGAAACGAAGGTTTTGACGGCGAGAACCCGCCGTCTCAGATCGTT  183

Query  280  ATCAAAGACGAAGATGGAGATAGAACGGTGGTGAATACTCGTTTCAGAGGTGATCCAAAA  339
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  184  ATCAACGACGAAGATGGAGATAGAACGGTGGTGAATACTCGATTCAGAGGTGATCCGAAA  243

Query  340  GACGCGCCGAAATTTGCGATTAAGGATCTTCCAGGGCTTGAACCAGATCCTTTTGAAGGT  399
            || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct  244  GATGCGCCGAAATTTGCCATTAAGGATCTTCCTGGACTTGAACCAGATCCTTTTGAAGGT  303

Query  400  GAGAAGTGGGATGGTCTAGGGTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTC  459
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  304  GAGAAGTGGGATGGTCTAGGTTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTC  363

Query  460  GCGCTAATCTCCGGAGGACTTGCGGCGGGGACTTATAACGAAGGTGCGACGGATTTCAAG  519
            ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  364  GCGCTAATCTCTGGTGGACTTGCGGCGGGGACGTATAACGAAGGTGCGACGGATTTCAAG  423

Query  520  GAGACGCCAGTGTATAAAGAGGCGATTCAATCACGTGACCTTCTTGATGAAGCAGAGAGT  579
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  424  GAGACGCCAGTATATAAAGAGGCGATTCAATCTCGTGACCTTCTTGATGAAGCAGAGAGT  483

Query  580  TCAAACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCGCCTA  628
            |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  484  TCAAACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCTCCTA  532


 Score =  195 bits (105),  Expect = 6e-49
 Identities = 117/123 (95%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCTCACCGTGAGCAGCGGTGGCGGAGGAGCTAGAATCCGCTGCAACGATCTCACT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1    ATGGCTCTCACCGTGAGCAGCGGTGGCGGAGGAGCTAGAATCCGCTGCAACGACCTCACC  60

Query  61   GATTCTTCTCGTAATCCTTTCTCCACCTTCCGACTCGTAAACTTCCCTTCTCCGTCAAGA  120
            |||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||
Sbjct  61   GATTCTTCTCGTAACCCTTTCTCCACCTTCCGACTCGTAAACTTCCCTAATCCATCAAGA  120

Query  121  ACC  123
            |||
Sbjct  121  ACC  123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30843766258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5