BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg339588 Length=639 Score E Sequences producing significant alignments: (Bits) Value AT1G73885.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 628 1e-179 > AT1G73885.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27786864-27787708 FORWARD LENGTH=579 Length=579 Score = 628 bits (340), Expect = 1e-179 Identities = 386/409 (94%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 220 GAACAGCCGGAAGAGGGAAACGGTGGGTACGACGGCGAAAACCCGCCGTCTCAGATCGAA 279 ||||||| |||||||||||||| || | |||||||| ||||||||||||||||||| Sbjct 124 GAACAGCAGGAAGAGGGAAACGAAGGTTTTGACGGCGAGAACCCGCCGTCTCAGATCGTT 183 Query 280 ATCAAAGACGAAGATGGAGATAGAACGGTGGTGAATACTCGTTTCAGAGGTGATCCAAAA 339 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 184 ATCAACGACGAAGATGGAGATAGAACGGTGGTGAATACTCGATTCAGAGGTGATCCGAAA 243 Query 340 GACGCGCCGAAATTTGCGATTAAGGATCTTCCAGGGCTTGAACCAGATCCTTTTGAAGGT 399 || |||||||||||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct 244 GATGCGCCGAAATTTGCCATTAAGGATCTTCCTGGACTTGAACCAGATCCTTTTGAAGGT 303 Query 400 GAGAAGTGGGATGGTCTAGGGTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTC 459 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 304 GAGAAGTGGGATGGTCTAGGTTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTC 363 Query 460 GCGCTAATCTCCGGAGGACTTGCGGCGGGGACTTATAACGAAGGTGCGACGGATTTCAAG 519 ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 364 GCGCTAATCTCTGGTGGACTTGCGGCGGGGACGTATAACGAAGGTGCGACGGATTTCAAG 423 Query 520 GAGACGCCAGTGTATAAAGAGGCGATTCAATCACGTGACCTTCTTGATGAAGCAGAGAGT 579 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 424 GAGACGCCAGTATATAAAGAGGCGATTCAATCTCGTGACCTTCTTGATGAAGCAGAGAGT 483 Query 580 TCAAACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCGCCTA 628 |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 484 TCAAACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCTCCTA 532 Score = 195 bits (105), Expect = 6e-49 Identities = 117/123 (95%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 1 ATGGCTCTCACCGTGAGCAGCGGTGGCGGAGGAGCTAGAATCCGCTGCAACGATCTCACT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGGCTCTCACCGTGAGCAGCGGTGGCGGAGGAGCTAGAATCCGCTGCAACGACCTCACC 60 Query 61 GATTCTTCTCGTAATCCTTTCTCCACCTTCCGACTCGTAAACTTCCCTTCTCCGTCAAGA 120 |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 61 GATTCTTCTCGTAACCCTTTCTCCACCTTCCGACTCGTAAACTTCCCTAATCCATCAAGA 120 Query 121 ACC 123 ||| Sbjct 121 ACC 123 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30843766258 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5