BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg339747

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75690.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain super...   632    0.0  


> AT1G75690.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain superfamily 
protein | chr1:28422110-28423285 REVERSE LENGTH=743
Length=743

 Score =  632 bits (342),  Expect = 0.0
 Identities = 429/468 (92%), Gaps = 18/468 (4%)
 Strand=Plus/Plus

Query  1    ATGCCAGTTTCAGCTCCATCTCCGCCTCGTCTTCTTCAATCTCCGTTCATTCACCGTCCA  60
            |||||||||||||||||||||||||||||   |||||| ||||||||||||||| |||| 
Sbjct  116  ATGCCAGTTTCAGCTCCATCTCCGCCTCG---TCTTCATTCTCCGTTCATTCACTGTCCC  172

Query  61   ATCAATTTCACTCCGTCTTC-TT-TC--C--GG--TCGCC-G--G-C-T--ACCTCTTAT  105
            |||||||||||||| ||||| || ||  |  ||  || || |  | | |  || ||||||
Sbjct  173  ATCAATTTCACTCCTTCTTCTTTCTCGGCGAGGAATCTCCGGTCGCCGTCAACATCTTAT  232

Query  106  CCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCAATATCAGTTGGTGTAGCA  165
            ||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct  233  CCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCGATATCTGTAGGCGTAGCA  292

Query  166  AGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACACAAATCGAAAATGCCGCT  225
            ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct  293  AGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACTCAAATCGACAATGCGGCT  352

Query  226  AAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAACGGTACCGGAGCTCAGAAATGCAGA  285
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  353  AAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAATGGCACCGGAGCTCAGAAATGCAGA  412

Query  286  TTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAACAAGTATCC  345
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || 
Sbjct  413  TTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAAGAAGTCTCA  472

Query  346  AACTGCATTAACTGTGATGGTGCTGGTTCCTTGACTTGCACTACTTGTCAAGGCTCTGGT  405
            ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  473  AACTGTATCAACTGTGATGGTGCTGGTTCCTTAACTTGCACTACTTGTCAAGGCTCTGGT  532

Query  406  GTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA  453
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  GTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5