BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg340533 Length=1914 Score E Sequences producing significant alignments: (Bits) Value AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4... 2689 0.0 AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3... 331 1e-89 AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 246 5e-64 AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits... 209 7e-53 > AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4 | chr3:925612-930974 REVERSE LENGTH=2664 Length=2664 Score = 2689 bits (1456), Expect = 0.0 Identities = 1540/1581 (97%), Gaps = 4/1581 (0%) Strand=Plus/Plus Query 1 ATGAACAGTCTTGTCAGAAGGAAACAAGTTGATTCTGTTCATCTGATCAAAAACGATGGA 60 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 604 ATGAACAGTCTTGTGAGAAGAAAACAAGTTGATTCTGTTCATCTTATCAAAAACGATGGA 663 Query 61 CCTCATCAGCTTGCCAAGAAACTATCCGCCGTTGATCTTGTCGCTATTGGAGTTGGGACA 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 664 CCTCATCAGCTTGCCAAGAAACTATCCGCCGTTGATCTTGTTGCTATTGGAGTTGGGACA 723 Query 121 ACAATTGGAGCAGGAGTGTATATTCTTGTGGGAACAGTAGCTAGAGAGCACACAGGACCT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 724 ACAATTGGAGCAGGAGTGTATATTCTTGTGGGAACGGTAGCTAGAGAGCACACAGGACCT 783 Query 181 GCTCTTGCTGTATCATTCTTCATTGCTGGTGTAGCTGCTGCTCTCTCGGCCTGTTGTTAT 240 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 784 GCTCTTGCTGTATCATTCTTCATTGCTGGAGTAGCTGCTGCTCTCTCTGCCTGTTGTTAT 843 Query 241 GCTGAGCTTGCTTCTCGTTGTCCATCTGCTGGGAGTGCTTATCATTATGCATACATATGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 844 GCTGAGCTTGCTTCTCGTTGTCCATCTGCTGGGAGTGCTTATCATTATGCGTACATTTGT 903 Query 301 CTTGGAGAAGGGATTGCTTGGTTGGTTGGTTGGGCGCTGGTGTTGGATTATACAATTGGT 360 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 904 CTTGGAGAAGGGATTGCTTGGTTGGTTGGTTGGGCACTGGTGTTGGATTATACAATTGGT 963 Query 361 GGATCAGCCATTGCCCGTGGCATAACTCCAAATCTGGCATCATTTTTTGGTGGTTTGGAC 420 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 964 GGATCAGCCATTGCCCGTGGCATAACTCCAAATCTGGCATCTTTTTTTGGTGGTTTGGAC 1023 Query 421 AAACTTCCTGTGTTCTTAGCTCGACAAACTATACCCGGGGTTGGTATTGTGGTTGATCCA 480 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 AATCTTCCTGTGTTCTTAGCTCGACAAACTATACCCGGGGTTGGTATTGTGGTTGATCCA 1083 Query 481 TGTGCAGCACTTTTGATTATGATTGTCACGATACTACTATGTTTTGGGATAAAGGAGAGT 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1084 TGTGCTGCACTTTTGATTATGATTGTCACGATACTACTATGTTTTGGGATAAAGGAGAGT 1143 Query 541 TCATTAGTACAAGCAATTGTAACATCAGTGAATGTTTGCACCTTGGTTTTCATCATAGTA 600 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 TCAACAGTACAAGCAATTGTAACATCAGTGAATGTTTGCACCTTGGTTTTCATCATAGTA 1203 Query 601 GTTGGTGGATATTTAGCTTGCAAGACCGGATGGGTTGGATATGATCTTCCGAGTGGGTAT 660 |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 1204 GTTGGTGGATATTTAGCTTGCAAGACTGGATGGGTTGGATATGATCTCCCCAGTGGGTAC 1263 Query 661 TTTCCTTTTGGACTAAATGGGATACTTGCCGGATCTGCTATAGTATTCTTCTCATACATT 720 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1264 TTTCCTTTTGGACTAAATGGGATACTTGCCGGATCTGCTGTAGTATTCTTCTCATACATT 1323 Query 721 GGATTTGATACTGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTTCCA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1324 GGATTTGATACTGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTTCCA 1383 Query 781 TTGGGAATCGGGATTGCATTACTGATATGCTGCATTTTATATATGCTTTTATCAGTAGTT 840 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1384 TTGGGAATCGGGATTGCATTACTGATATGCTGCATTTTGTATATGCTTTTATCAGTAGTT 1443 Query 841 ATTGTTGGATTAGTCCCATACTATTCATTGAATCCTGATACTCCTATCTCCTCTGCATTT 900 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1444 ATTGTTGGATTGGTCCCATACTATTCATTGAATCCTGATACTCCTATCTCCTCTGCATTT 1503 Query 901 GGAGACAGTGGGATGCAATGGGCAGCGTACATCTTAACCACTGGGGCAATAACTGCTCTA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 GGAGACAGTGGGATGCAATGGGCAGCGTACATCTTAACCACTGGGGCAATAACTGCTCTA 1563 Query 961 TGCGCGAGTTTGTTGGGTTCCCTTCTGGCTCAGCCACGAATTTTCATGGCAATGGCTAGG 1020 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1564 TGTGCGAGTTTGTTGGGTTCCCTTCTGGCTCAGCCACGAATATTCATGGCAATGGCTAGG 1623 Query 1021 GATGGATTGTTGCCGGCTTTCTTTTCAGAAATTAGCCCACGAACTCAAGTACCAGTGAAA 1080 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 GATGGATTGTTGCCAGCTTTCTTTTCAGAAATTAGCCCACGAACTCAAGTACCAGTGAAA 1683 Query 1081 AGCACAATAGCTATTGGTGTGCTTGCCGCTGCACTCGCATTTTTCATGGATGTTGCACAG 1140 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1684 AGCACAATAGCTATTGGTGTTCTTGCCGCTGCACTCGCATTTTTCATGGATGTTGCACAG 1743 Query 1141 TTGTCCGAAATGGTTAGTGTAGGCACTCTAATGGCATTCACTGCCGTTGCAG-CATGTGT 1199 |||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1744 TTGTCCGAGATGGTTAGTGTAGGCACTCTAATGGCATTCACTGCCGTTGCAGTC-TGTGT 1802 Query 1200 GCTAGTTCTTAGATATGTACCACCAGATGGAGTTCCCCTATCATCTTCCTCTCAAACTTT 1259 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1803 GCTAGTTCTTAGATATGTACCACCAGATGGAGTTCCCCTATCATCTTCCTCCCAAACTTT 1862 Query 1260 GAGTGATACCGATGAAAGTGGAGCTGAAACTGAAAATTTTCTTGTGGATGCTATAGAATC 1319 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1863 GAGTGATACCGATGAAAGTAGAGCTGAAACTGAAAATTTTCTTGTGGATGCTATAGAATC 1922 Query 1320 TTCTGATTCCCCTCTACTTGGCAATGAAACTGCACGAGATGAAAAGTATTTTGGAAAGAG 1379 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1923 TTCTGATTCCCCTCTACTTGGAAATGAAACTGCTCGAGATGAAAAGTATTTTGGAAAGAG 1982 Query 1380 AAGAAAAATTGC-GTCCTGGAGTATAGCTCTTGTGTGCATAGGTGTGCTAGGTCTTGCTT 1438 ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1983 GAGAAAAATTGCTG-CCTGGAGTATAGCTCTTGTGTGCATAGGTGTCCTAGGTCTTGCTT 2041 Query 1439 CAGCAGCTTCGGCTGAGCGTCTTCCAAGTTTTCCTCGGTTCACTATATGTGGTGTCAGTG 1498 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2042 CAGCAGCTTCAGCTGAGCGTCTTCCAAGTTTTCCTCGTTTCACTATATGTGGTGTCAGTG 2101 Query 1499 CCGTCATCTTGCTTGGCAGTTTGATTACTCTTGGCTACATCGACGAGGATGAAGAAAGGC 1558 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2102 CAGTCATCTTGCTTGGCAGTTTGATTACTCTTGGCTACATTGACGAGGATGAAGAAAGGC 2161 Query 1559 ACAACTTTGGACACAAAGGAG 1579 ||||||||||||||||||||| Sbjct 2162 ACAACTTTGGACACAAAGGAG 2182 Score = 396 bits (214), Expect = 5e-109 Identities = 236/247 (96%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 1664 GGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTAC 1723 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2182 GGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTAC 2241 Query 1724 TTGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGA 1783 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2242 TTGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTGATATGGCTACTTATTGGA 2301 Query 1784 AGCATGATCTATCTCTTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTT 1843 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2302 AGCATGATCTATATCTTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTACGTT 2361 Query 1844 CCAAGGACGACTTGTACCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAAT 1903 || | | ||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 2362 CCCACAATGACTTGTACGAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGATCAAT 2421 Query 1904 GCAGCAG 1910 || |||| Sbjct 2422 GCTGCAG 2428 > AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3 | chr5:14590166-14594384 FORWARD LENGTH=2241 Length=2241 Score = 331 bits (179), Expect = 1e-89 Identities = 641/857 (75%), Gaps = 59/857 (7%) Strand=Plus/Plus Query 97 CTTG-TCGCTATTGGAGTTGGGA-CAACAATTGGAGCAGGAGTGTATATTCTTGTGGGAA 154 |||| | || ||||| ||| ||| |||||||||||||||| || |||||||||||||||| Sbjct 275 CTTGATTGCCATTGGTGTT-GGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAA 333 Query 155 CAGTAGCTAGAGAGCACACAGGACCTGCTCTTGCTGTATCATTC-TTCATTGCTGGTGTA 213 |||||||||||||||| ||||||||||||||||| |||| ||| || || ||||| | Sbjct 334 CAGTAGCTAGAGAGCATTCAGGACCTGCTCTTGCTTTATCCTTCCTT-ATAGCTGGAATT 392 Query 214 GCTGCTGCTCTCTCGGCCTGTTGTTATGCTGAGCT-TGCTTCTCGTTGTCCATCTGCTGG 272 ||||||| || || || | ||||||||| || || | || ||||| ||| |||||||| Sbjct 393 TCTGCTGCCCTTTCTGCGTTTTGTTATGCGGAACTAT-CTAGTCGTTTTCCCTCTGCTGG 451 Query 273 GAGTGCTTATCATTATGCATACATATGTC-TTGGAGAAGG-GATTGCTTGGTTGGTTGGT 330 |||||| ||||||||| | ||||| || | |||| ||||| | |||| |||||| |||| Sbjct 452 GAGTGCCTATCATTATTCTTACATTTG-CATTGGTGAAGGTG-TTGCGTGGTTGATTGGC 509 Query 331 TGGGCGCTGGTGTTGGATTATACAATTGGTGGATCAGCCA-TTGCCCGTGGCATAACTCC 389 ||||||||| | ||||| || ||||||||||| ||| | | ||||||| |||||| |||| Sbjct 510 TGGGCGCTGATTTTGGAATACACAATTGGTGGTTCAAC-AGTTGCCCGCGGCATATCTCC 568 Query 390 AAATCTGGCA-TCATTTTTTGGTGGTTTGGACAAACTTCCTGTGTTCTTAGCTCGACAAA 448 |||||||||| | ||||| |||||| || || ||| | |||||||| || Sbjct 569 AAATCTGGCAATGATTTTC-GGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCAT- 626 Query 449 CTA-TACCCGGGG-TTGGTATTGTGGTTGATCCATGTGCAGCACTTTTGATTATG-ATTG 505 | | | ||| || ||| |||||| ||||| || ||||| || | | | | | |||| Sbjct 627 CAAAT-CCCAGGCCTTGATATTGTTGTTGACCCGTGTGCTGCTGTGCT-AGTGTTCATTG 684 Query 506 TCAC-GATACTACTATGTT---TTGG-GATAAAGGAGAGTTCATTAG-TACAAGCAATTG 559 | || | ||| | |||| |||| | |||||||||| |||| | | || | ||||| Sbjct 685 TAACAGG-ACT--T-TGTTGCCTTGGAG-TAAAGGAGAGCACATTTGCT-CAGGGAATTG 738 Query 560 TAACATCAGTGAATGT-TT-G-CACCTTGGT-TTTCATCATAGTAGTTGGTGGATATTTA 615 ||||| ||| ||||| || | || | | | ||| ||||||||| ||| | ||||| Sbjct 739 TAACAACAGCAAATGTCTTTGTCA--T-GATATTTG-TCATAGTAGCTGGAAGCTATTTG 794 Query 616 -GCTTGCAAGACCGGATGGGTTGGATATGATCTTCCGA-GTGGGTATTTTCCTTTTGGAC 673 | || |||||| || |||||||| ||||| ||||| | | ||||||||||||| || Sbjct 795 TGTTT-CAAGACAGGTTGGGTTGGTTATGAACTTCCAACG-GGGTATTTTCCTTACGGGG 852 Query 674 TAAATGGGATACTTGCCGGATCTGCTA-TAGTATTCTTCT-CATACATTGGATTTGATAC 731 | |||| || ||| | |||||||||| | || ||||| | | ||||| || |||||||| Sbjct 853 TTGATGGAATGCTTACTGGATCTGCTACT-GTCTTCTT-TGCCTACATCGGGTTTGATAC 910 Query 732 TGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTT-CCATTGGGAATCG 790 || | |||| ||| ||||||||||||||||| | ||||| || || | || || | Sbjct 911 AGTTGCAAGTATGGCAGAGGAGGTGAAAAATCCCCGGCGGGAT-TTACCGCTCGGTATTG 969 Query 791 GGATTGCATTACTGATATGCTGCATTT--TATATATGCTTTTATCAGTAGTTATTGTTGG 848 ||||| | | ||| | || || ||| | || ||| | | || || ||||||||||| Sbjct 970 GGATTTCGCTCCTGCTTTGTTG--TTTGCTGTACATGATGGTGTCTGTTGTTATTGTTGG 1027 Query 849 ATTAGTCCCATACTATTC-ATTGAATCCTGATACTCCTATCTCCTCTGCATTTGG-AGAC 906 ||||| || || ||| | || || ||||| ||||| || || || |||||| || | Sbjct 1028 TTTAGTGCCGTATTATGCTATGGAC-CCTGACACTCCAATATCATCCGCATTTTCTAGTC 1086 Query 907 AGTGGGATGCAATGGGC 923 | ||| || |||||||| Sbjct 1087 A-TGGAATTCAATGGGC 1102 > AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein Fb12, blastp match of 53% identity and 1.2e-13 P-value to GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346 Length=2346 Score = 246 bits (133), Expect = 5e-64 Identities = 157/169 (93%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1740 GAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCT 1799 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| Sbjct 2006 GAGCTGGGACATGGATCAGGGTCTTGGTATCGCTACTTATCGGAAGCATGATCTGTCTCT 2065 Query 1800 TCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTTCCAAGGACGACTTGTA 1859 ||| ||||||||||||| | || |||||||||| ||||| |||||||| |||||||||| Sbjct 2066 TCTGTGGCCGATCTCACTGTTTGCTGAACAATGTGGTTTACGTTCCAACAACGACTTGTA 2125 Query 1860 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATGCAGC 1908 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2126 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTTAATGCAGC 2174 Score = 132 bits (71), Expect = 1e-29 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1664 GGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTAC 1723 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1850 GGGTTTCTCTGCTCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTAC 1909 Query 1724 TTGATCATCAACATTGG 1740 ||||||||||||||||| Sbjct 1910 TTGATCATCAACATTGG 1926 > AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1100085-1100246 REVERSE LENGTH=162 Length=162 Score = 209 bits (113), Expect = 7e-53 Identities = 135/145 (93%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 1746 GGA-CATGGA-TCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCTTCTA 1803 ||| || ||| |||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 19 GGATCAGGGATTCAGGGTCTTGGTATGGCTATTTACTGGAAGCATGATCTATCTCTTCTA 78 Query 1804 TGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTTCCAAGGACGACTTGTACCAG 1863 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||| Sbjct 79 TGGCCGATCTCACAGCTTACTGAACAATGTGGTTTACGTTCCAACGACGACTTGAACCAG 138 Query 1864 AAAAACAACAGATCATCTTGCTTAA 1888 |||| |||||||||||||||||||| Sbjct 139 AAAA-CAACAGATCATCTTGCTTAA 162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94778628960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5