BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341087
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Fusaric a... 3552 0.0
> AT3G09450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Fusaric
acid resistance protein, conserved region (InterPro:IPR006726);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G28780.1); Has 503 Blast hits to 494 proteins
in 215 species: Archae - 0; Bacteria - 423; Metazoa - 0; Fungi
- 0; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source:
NCBI BLink). | chr3:2907548-2910091 FORWARD LENGTH=2328
Length=2328
Score = 3552 bits (1923), Expect = 0.0
Identities = 2206/2340 (94%), Gaps = 30/2340 (1%)
Strand=Plus/Plus
Query 1 ATGCGCGACACAGCATGGCTCGAGCGACTTGGCCTGGCTCTGCGAACCGCCATGGCTTGT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGCGACACAACATGGCTCGAGCGACTTGGCCTGGCTCTGCGAACCGCCATGGCTTGT 60
Query 61 CTCATCGTGAGCTTAACCACTTTGTACGGTCCCAAACCACTAAGACACTTCACAACGTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCATCGTGAGCTTAACCACTTTGTACGGTCCCAAACCACTAAGACACTTCACAACGTTT 120
Query 121 CCAGCCTTTTCTTACTTGACCACAATCCTGATCTGGCTCTCTGATGCTGAACCAACATAC 180
||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 CCAGCCTTTTCTTACCTGACCACAATCTTGATCTGGCTCTCCGATGCTGAACCAACATAC 180
Query 181 GGTGAAGTACTCAAGTGCTGTCTTGATGTCTCTTACGCCACTTTTCAGACAATAGCCATT 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCGAAGTTCTCAAGTGCTGTCTTGATGTCTCTTACGCCACTTTTCAGACAATAGCCATT 240
Query 241 GTGCTAGTGAGTGTCTTGGTGGTTGGACCAGCTTCACTAGGGAATGGCTTGGTGGCTCCA 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGCTAGTGAGTGTCTTGGTGGTTGGACCAGCTTCACTAGGGAATGGCTTGGTGGCTCCA 300
Query 301 GTTGCTGTGGCTCTAGCTTCATTCATAGTGGCTTTCCCCGTGTCCACGAGTCTGCTGACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGCTGTGGCTCTAGCTTCATTCATAGTGGCTTTCCCCGTGTCCACGAGTCTGCTGACT 360
Query 361 AAACGTATTGCCTTTGGGCAGATCGTTGTTGTCTACGTGACTTTTGTGGTGTTCAATGGA 420
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 361 AAACGGATTGCCTTTGGGCAGATTGTTGTAGTCTACGTGACTTTTGTGGTGTTCAATGGA 420
Query 421 GAGGTGGCTCATGTTTTCATGCTCCCGGTTCATGTGGCGGGAAGTACAGCACTTGGAGCC 480
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 GAGGTGGCTCATGTATTCATGCTCCCGGTTCATGTGGCAGGCAGTACAGCACTTGGAGCC 480
Query 481 ATTGCTTCTCTCATCGCAGTGCTTCTCCCGTTTCCAAGGCTGGCTCATAGTCAGATGAGT 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTGCTTCACTCATCGCAGTGCTTCTCCCGTTTCCAAGGCTGGCTCATAGTCAGATGAGT 540
Query 541 AAAGGTTGCAAATTATATGCTGAAAATGCTCTTGAGAGGTTGAATATGTTTGTCGAGATC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 AAGGGTTGCAAATTATATGCTGAAAATGCTCTTGAGAGGTTGAATATGTTTGTGGAGATC 600
Query 601 ATGATGGCTCGAGACAACACCACAGCTCAGGTTTTGCTAGCACGGGCTGCTTCATTGTCT 660
|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 601 ATGATGGCACGAGACAACACCACAGCTCAGGTTTTGATCGCACGGGCTGCTTCATTGTCT 660
Query 661 GCAGCAGCTAAAAACACACTCAAGAACATCAAAATCCACCATGAGCGTATGGCATGGGAG 720
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GCAGCAGCTAAAAACACACTCAAGAACATCAAAATCCACCATGAGCGTATATCATGGGAG 720
Query 721 CGACCAGATACAAGGTTCTTGAGAAGGAAGCAGAAGTTGGATCCTGGAGAGAAACTGCAT 780
||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 721 AGACCAGATACAAGATTCTTGAGCAGGAAGCAGAAGTTGGATCCTGCAGAGAAACTGCAT 780
Query 781 GCAACAGAATTTCTGATGAGGGGACTGGAGCTGGCATTGGGTTCTTGCAGTTCCTTTCCT 840
|||||||| |||||| |||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 781 GCAACAGATTTTCTGTTGAGGGGATTGGAGCTGGCTTTGGGCTCTTGCAGTTCCTTTCCT 840
Query 841 CAAGGCATGAGCCGCGACGAACTGACTCGTCTTTTAGAAGGTCCCAGGACACAGATTGCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 CAAGGCATGAGCCGCGACGAACTGACTCGTCTTTTAGAAGGTCCCAGGACACATATTGCT 900
Query 901 TCCAAG-TCAGCATCTACTCTCAAGTCCCAAGATAGTCTAGGGTGGCATCTTGAGGCTGG 959
||| | |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 -CCACGGTCAGAATCTACTCTCAAGTCCCAAGATAGTCTAGGGTGGCATCATGAGGCTGA 959
Query 960 GTCTCTGTCTACTGCAGCTTTACCGGTTTGCTTCTTCAGATATTGCGTAGAACTCTTCAG 1019
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 960 GTCTCTGTCTACTGCAGCTTTACCGGTTTGCTTCTTCCGGTACTGCGTAGAACTCTTCAG 1019
Query 1020 AGATGATTTCTTATCTTTGAGACAAGACAGTATATCCGTAAATAGAAGTAACACAGAGGA 1079
|| ||||||||||||||||||||||||||||| |||||||||| |||| | ||| |||||
Sbjct 1020 AGGTGATTTCTTATCTTTGAGACAAGACAGTAAATCCGTAAATGGAAGGACCACGGAGGA 1079
Query 1080 AGAAATTCACCCAG-AACTCGAAGGATTGTCCATGGCCAGAAAGGTTTGGGACATTCTAT 1138
||||||||| |||| || |||||| |||||||||||||||||| ||||||||||||| |
Sbjct 1080 AGAAATTCATCCAGCAAA-CGAAGGGTTGTCCATGGCCAGAAAGTTTTGGGACATTCTCT 1138
Query 1139 GTGTCTGGATGGCCAGAGAAAGGTTTGTTTTTGCATTCAAGTGCTCAATTTCCCTAGGCC 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1139 GTGTCTGGATGGCCAGAGAAAGGTTTGTTTTTGCATTCAAGTGCTCAATTTCTCTTGGCC 1198
Query 1199 TCGCGGTGCTGTTTGGTATAATGTATAATAAAAAGAACGGGTATTGGTCGGGTCTAACTG 1258
| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 TTGCGGTGCTGTTTGGTATACTGTATAATAAAAATAACGGGTATTGGTCGGGTCTAACTG 1258
Query 1259 TAGCCATTAGCCTTGTAAGCGGTAGGCAAGCAACATTAACAGTAGCAAATTCTCGTCTAC 1318
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1259 TAGCCATTAGCCTTGTAAGCGGTAGGCAAGCAACACTAACAGTAGCAAATTCTCGTCTAC 1318
Query 1319 AAGGGACAGCGATGGGATCAGTCTACGGTCTAATATGTTGTTCTGTTTTCCAAAGACTAG 1378
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AAGGGACAGCCATGGGATCAGTCTACGGTCTAATATGTTGTTCTGTTTTCCAAAGACTAG 1378
Query 1379 AAGAATTCAGGTTCTTACCTCTGCTCCCTTGGATAATCTTGGCTGTCTTCATGAGGCACA 1438
|||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||
Sbjct 1379 AAGAATTCAGGTTCTTACCTCTTCTCCCTTGGATAATCCTCGCCGTCTTCATGAGGCACA 1438
Query 1439 GCAAAGTCTATGGCCAGCCTGGAGGAGTTACAGCTGCAATTGCTGCACTGTTGATACTTG 1498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1439 GCAAAGTCTATGGCCAGCCTGGAGGAGTTACGGCTGCAATTGCTGCACTGTTGATACTTG 1498
Query 1499 GAAGGAGAAATTATGGAGCTCCAACTGAATTTGCAATCGCTCGCATCGTTGAAGCTTCAA 1558
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1499 GGAGGAGAAATTATGGAGCTCCAACTGAATTTGCAATCGCTCGCATCGTTGAAGCTTCGA 1558
Query 1559 TTGGGTTGCTCTGTTTTGTCTTCGGGGAGATTCTTGTCACCCCTGCGAGAGCAGCAACTC 1618
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1559 TCGGGTTGCTCTGTTTTGTCTTCGGGGAGATTCTTGTCACCCCTGCGAGAGCAGCAACGC 1618
Query 1619 TTGCAAGAACCGAACTTTCACACTGTCTCGACGCCCTCTTAGATTGCATCCAATCACTGG 1678
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1619 TTGCAAGAACCGAAATTTCACACTGTCTCGATGCCCTCTTAGATTGCATCCAATCACTCG 1678
Query 1679 TTCTTTGTTCTGAGCAGAAGAACCAGAAAACGTCAGTGGTTGCAGATTTGAGAACAAGGC 1738
||||||||||||||||||||||||||||| || | | ||||||||||||||| ||| |
Sbjct 1679 TTCTTTGTTCTGAGCAGAAGAACCAGAAA--GT--G-G-TTGCAGATTTGAGAAAAAGTC 1732
Query 1739 AGGCAAAACTCAAATCTCATGTTGAAGCATTAGAGAGGTTTACAGCAGAAGCCTTAACAG 1798
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1733 AGGTAAAACTCAAATCTCATGTTGAAGCATTAGAGAGGTTTGCAGCAGAAGCCTTAACAG 1792
Query 1799 AGCCTAAGATTCCGTTCCTCTGTCCA-CTCAACACAGTCAGTTACAACAAGCTTTTGGGC 1857
|||||||||||||||||||| | || |||||||| | ||||||||||| ||||||||||
Sbjct 1793 AGCCTAAGATTCCGTTCCTCCG-CCGGCTCAACACGGACAGTTACAACAGGCTTTTGGGC 1851
Query 1858 TCTTTCTCGAAGATATCTGACCTTTGTCTGTATGTTTGTGATGGCCTCAAAAATCTATCT 1917
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1852 TCTTTCTCGAAGATATCTGATCTTTGTCTCTATGTTTGTGATGGCCTCAAAAATCTATCT 1911
Query 1918 AGAGTTCAACCAACACTAGGATTTCCTTGGGACAACATCACTCATGAGCTAAGAGCCTTT 1977
|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 1912 GGAGTTCAACCAACACTTGCATTTCCTTGGGACAACATCACTCATGAGCTTAGAGCCTTC 1971
Query 1978 CAAGAAAAGCTTCACCCATCGGTGAAATGCTC--------TTT---AA-CCAAGTCTCAA 2025
||||||||||||||||| ||||||||||||| ||| || |||||||||||
Sbjct 1972 CAAGAAAAGCTTCACCCTTCGGTGAAATGCTTAAAAGAGATTTCTCAAACCAAGTCTCAA 2031
Query 2026 GCAAGACTCCAAAAGGAGTTGCAGAAGAGAAAGATCTGCCATGATGTTGAAGCAGGAACA 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 GCAAGACTCCAAAAGGAGTTGCAGAAGAGAAAGATCTGCCATGATGTTGAAGCAGGAACA 2091
Query 2086 ACATCCAATGAAAACTACTCAAACATGGAGTTGGGTCCATGCCAGGATGATGCAGAGAGG 2145
||||| || || ||||||||| |||||||| |||||||| |||||| ||||| ||||||
Sbjct 2092 ACATCAAACGACAACTACTCATACATGGAGCTGGGTCCAAGCCAGGCTGATGTGGAGAGG 2151
Query 2146 TTTTCGGTTTCTTTCGTAATGCTACTGAAGGAAGCAACTGACAAGATAAGT-GATAACAC 2204
||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||
Sbjct 2152 TTTTCGGTTTCTTTCGTCATGCTACTGAAGGAAGCAACAGACAAGATAAGTTG-TAACAC 2210
Query 2205 AGCTGAAGA-G-GTTCTCAAGAGTGAAACTGCTCTATGTTTGAGCAGTCTAGGGTTTTGC 2262
||| || || | |||| |||||||||||||| |||||| |||||||||||||||| |||
Sbjct 2211 AGCAGACGATGCGTTC--AAGAGTGAAACTGCCCTATGTCTGAGCAGTCTAGGGTTCTGC 2268
Query 2263 ATTAGCAGATTGATGCAAGAAACAATATGTATTATGACAGAAATAACCCATACAACTTGA 2322
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 ATTAGCAGATTAATGCAGGAAACAATATGTATTATGACAGAAATAACCCATACAACTTGA 2328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5