BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341304
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11840.1 | Symbols: PUB24 | plant U-box 24 | chr3:3736400-37... 2104 0.0
> AT3G11840.1 | Symbols: PUB24 | plant U-box 24 | chr3:3736400-3738257
REVERSE LENGTH=1598
Length=1598
Score = 2104 bits (1139), Expect = 0.0
Identities = 1288/1360 (95%), Gaps = 9/1360 (1%)
Strand=Plus/Plus
Query 1 ATGGATCATGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 ATGGATCAAGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTA 109
Query 61 GAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAGCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 110 GAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAACATC 169
Query 121 GTTAAATGGCTCAAAAAGGTCCCTTCTTGTCCTGTCACGAAGCAACCTCTTCCCTTAGAC 180
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 170 GTTAAATGGCTCGAAAAGGTCCCTTCTTGTCCCGTCACGAAGCAACCTCTTCCCTTAGAC 229
Query 181 TCCGATCTTACACCTAACCACATGCTTCGCCGTCTGATCCAACATTGGTGCGTTGAGAAC 240
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 230 TCCGATCTTACACCTAACCACATGCTTCGCCGTCTTATCCAACACTGGTGCGTCGAGAAC 289
Query 241 GAGACTCGTGGCGTTGTCAGAATCTCTACTCCTCGAGCTCCTCTTGGAAAACTTAACGTC 300
||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 290 GAGACACGTGGCGTTGTCAGAATCTCTACACCTCGAGTTCCTCCTGGAAAACTTAACGTC 349
Query 301 GTCGAGGAGATCAAGAATCTCAAAAGGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACG 360
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 350 GTCGAAGAGATCAAGAATCTCAAAAAGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACG 409
Query 361 TTGCAGAAGCTTGAAGTTTTGGCAATGGAGGGAAATAACAGGAGATTGATGTTTGAAGGA 420
||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
Sbjct 410 TTGCAGAAGCTTGAAGTTTTGGCAATGGACGGAAATAACAGAAGATTGATGTGTGAATGT 469
Query 421 GGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGAGGGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 GGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGACGGA 529
Query 481 CGACGTCGTATCAAAGGGCTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTGTTCCA 540
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 530 CGACGTCGTATCAAAGGACTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTATTCCA 589
Query 541 TCAAACGACGCAAAAACAATTTTGATCGAAAACGATCGAGTCATGGAATCGTTGACTTGG 600
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 590 TCAAACGACGCAAAAACAATCTTGATGGAAAACGATCGAGTTATGGAATCGTTGACTTGG 649
Query 601 CTTTTACACCAAGAAGACTTTTTCAATAAGGCTTATACAATTGTGATCTTAAAGAATCTA 660
|||||||||||||||||||| ||| ||||||||||||||||||| | || | |||||||
Sbjct 650 GTTTTACACCAAGAAGACTTTCTCAGTAAGGCTTATACAATTGTGCTATTGAGGAATCTA 709
Query 661 ATGGAACACACTTCCTCTCATATTGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATC 720
| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 710 ACGGAATACACTTCCTCTCATATCGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATC 769
Query 721 ATAGAGTTTCTCAAGGATGTAGTAAGCAGTCTTAATCGGACGAGCCCTACCGTGAGAGAT 780
|||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 770 ATAGGGTTTCTCAAGGATGTTGTAAATAGTGTTAATCGGACGAGCCCTACCGTGAGAGAA 829
Query 781 ACGGTACA---ATCATCAAGGCCTAGCTTGGGGAAAAA-GGAACCATCAAAACTTGATCA 836
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 830 ACGGTACAGTCATCATCAAGGCCTAGCTT-GGGAAAAACGGAACCATCAAAACTTGATCA 888
Query 837 TAGTTTGGTCATTAAACAAGCGGTGACTGCAGCGCTGATGATTCTTTTAGAGACTTCTTC 896
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 889 TAGTTTGGTCATCAAACAAGCGGTGACTGCCGCGCTGATGATTCTTTTAGAGACTTCTTC 948
Query 897 GTGGAGCCGAAACCGATCGA-TCCTTGTGGATCTCGATGCGGTTTCTGAACTCATCGAAC 955
|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 949 GTGGAGCCGAAACCGATC-ACTCCTTGTGGATCTCGGTGCGGTTTCTGAACTCATCGAAC 1007
Query 956 TGGAAATGAGCTACTCAGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTGTCTC 1015
| ||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1008 TCGAAATAAGCTACACTGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTATCTC 1067
Query 1016 GTTTATGTTGTTGCGCCAACGGTAGAGCCGAGATTCTTTCTCATAGGGGCGGAATCGCGG 1075
|||||||||| || || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1068 GTTTATGTTGCTGTGCGAACGGTAGAGCCGAGATTCTTGCTCATAGGGGCGGAATCGCGG 1127
Query 1076 TTGTGACGAAGCGGCTATTGAGGGTTTCACCTGCAGCAGACGATAGAGCTATCTCTATCC 1135
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1128 TTGTGACAAAGCGGCTATTGAGGGTTTCACCTGCGGCAGACGATAGAGCTATCTCTATCC 1187
Query 1136 TAAGTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTAAACGTTG 1195
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1188 TAACTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTTAATGTTG 1247
Query 1196 GGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGA 1307
Query 1256 AAGCAAAAGATATACTTAAAGATCATTTTGATGAGTGGAAGAAGTTTCCGTGTATCGACA 1315
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1308 AAGCAAAAGAGATACTAAAAGATCATTTTGATGAGTGGAAGAAGTTTCCATGTATTGACA 1367
Query 1316 TAACTCTTCTCACTAAGCTTCTAAGC-TCCTCACCCAAAG 1354
||||||||||||||||||| |||||| || ||||||||||
Sbjct 1368 TAACTCTTCTCACTAAGCTGCTAAGCATC-TCACCCAAAG 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5