BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341506
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13784.1 | Symbols: AtcwINV5, CWINV5 | cell wall invertase 5... 2477 0.0
> AT3G13784.1 | Symbols: AtcwINV5, CWINV5 | cell wall invertase
5 | chr3:4528529-4530669 REVERSE LENGTH=1710
Length=1710
Score = 2477 bits (1341), Expect = 0.0
Identities = 1599/1724 (93%), Gaps = 16/1724 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACTATAGTTTGGTGTAACATTGCCATTTTCTTGTTGGTCTTGTTGTTTCTCGCT 60
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct 1 ATGGCTAATATAGTTTGGTGTAACATTGCCATGTTCTTGTTGGTCTCGTTGTTTCTCACT 60
Query 61 GACAATGCTATTGTTGTTCTTGATGCTTTGCACAACGTCCCCAATAATATCAAGAACCAA 120
||| ||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 61 GACGATGCTGTTGTTGTTCTTGATGCCTTGGACAACGTTCCCAATAATATCAAGAACCAA 120
Query 121 CCTTACCGAACCGGTTATCATTTCCAGCCTCCCAAAAATTGGATGAACGGGCCTATGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTACCGAACCGGTTATCATTTCCAGCCTCCCAAAAATTGGATGAACGGGCCTATGATA 180
Query 181 TACAAAGGAATCTACCATCTATTCTACCAATGGAACCAAAACGGCGCCGTCATGGACGTA 240
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TACAAAGGAATCTATCATCTATTCTATCAATGGAACCAAAACGGCGCCGTCATGGACGTT 240
Query 241 AATGAAACCGTATGGGGCCATGCAACGTCAACGGATCTAATCAACTGGATCACACTTTCT 300
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AACAAAACCGTATGGGGCCATGCAACATCAACGGATCTAATCAACTGGATCACACTTTCT 300
Query 301 CCAGCAATCAAACCATCTCGACCGTCCGATATCAACGGATGCTGGTCAGGCTCCGTCACG 360
|||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 CCAGCAATCAGACCATCTCGACCGTCCGATATTAACGGATGCTGGTCCGGCTCCGTCACG 360
Query 361 ATTCTCACC-AATGGCAAACCCGTAATTATTTACACCGGTAACGACCGTTATAACCGTCA 419
|||||| || ||||||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct 361 ATTCTC-CCTAATGGCAAACCTGTAATTCTTTACACCGGCAACGACCGTTATAACCGCCA 419
Query 420 GGTCCAAAACCTAGCTAAACCTAAAAACCTCACCGATCCATATCTCCGTCACTGGATAAA 479
|||||||||| ||| |||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 420 GGTCCAAAACTTAGTTAAACCTAAAAACCTCACCGATCCATATCTACGGCACTGGACCAA 479
Query 480 ATCGCCGGAAAATCCCCTTGTGACACCGAACGCCGTAAACCACATCAACTCCACCGCGTT 539
|||||||||||||||||| |||||||| | | |||| |||||||||||||||| ||||||
Sbjct 480 ATCGCCGGAAAATCCCCTCGTGACACCTAGCCCCGTCAACCACATCAACTCCAGCGCGTT 539
Query 540 TCGTGATCCAACCACCGCGTGGCTAGGCCGTGACAAGCGTTGGCGTATAACCACTGGAAG 599
|||||||||||||||||||||| | ||||||||| ||||||||| |||||||| |||||
Sbjct 540 TCGTGATCCAACCACCGCGTGGTTTGGCCGTGACGGGCGTTGGCGCATAACCACCGGAAG 599
Query 600 CCAAGAAGGTCGCCGTGGATTAGCGATTCTACACACGAGCCGCGATTTCGTACGATGGAA 659
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 600 CCAAGAAGGTCGACGTGGATTAGCGATTCTACACACGAGCAAAGATTTCGTAATATGGAA 659
Query 660 GCAATCTCCGAAGCCTCTTCATTACCACGAAGGTACCGGAATATGGGAGTGCCCTGATTT 719
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 660 GCAATCTCCAAAGCCTCTTCATTACCACGACGGTACCGGAATGTGGGAGTGCCCTGATTT 719
Query 720 TTTCCCGGTGTCGAGAACTGATTCACGCGGCCTCGATACGTCGTCGTCT-GCTGGGCCGA 778
|||||||||| | |||||||||||||| ||||| |||||||| | || | ||||||||
Sbjct 720 TTTCCCGGTGGCTAGAACTGATTCACGGGGCCTAGATACGTCTTTTTCAAG-TGGGCCGA 778
Query 779 TGATTAAACACGTGCTTAAAGTGAGCTTAACAGATACTTTTCGTGATTACTACACGATTG 838
|| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 779 TGGTTAAACACGTCCTTAAAGTGAGCTTAACAGATACGTTTAATGATTACTACACGATTG 838
Query 839 GTACGTACGATGAAGTGAGAGATGTCTACGTACCGGACAAGGGTTTTGTTCAGGACGAAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTACGTACGATGAAGTGAGAGATGTCTACGTACCGGACAAGGGTTTTGTTCAGGACGAAA 898
Query 899 CGGCTCCGAGATACGATTACGGCAAATTTTACGCGTCGAAGACATTTTACGACTCGGTTA 958
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 899 CGGCTCCGAGATATGATTACGGCAAATTTTATGCGTCGAAAACATTTTACGACTCTGTTA 958
Query 959 ATCAACGGAGGATTTTGTGGGGTTGGGTTAACGAGTCGTCGCCGGAGAAAGATAACATCG 1018
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 ATCAGCGCAGGATTTTGTGGGGTTGGGTTAACGAGTCGTCACCGGAGAAAGATAACATCA 1018
Query 1019 AGAAGGGTTGGGCTGGTTTGCAGGCTATTCCTAGGGAAGTATGGCTTGATAAATCAGGCA 1078
||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |
Sbjct 1019 AGAAGGGTTGGGCCGGTTTACAGGCTATTCCTAGGAAAGTATGGCTTGATGAATCAGGAA 1078
Query 1079 AGAGATTGGTGCAATGGCCGGTTAAGGAAATAGAGAGGTTACGTACAACGCAAGTCAAGT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGAGATTGGTGCAATGGCCGGTTAAGGAAATAGAGAGGTTACGTACAACGCAAGTCAAGT 1138
Query 1139 GGGTAAACAAAGTTTTGAAAGGAGGAGGATCGGTCATAGAGGTTCATGGAGTCACAGCTT 1198
||| ||||||| | ||||||||||| | ||||| || |||||||||||||||||||||
Sbjct 1139 GGGGAAACAAACTATTGAAAGGAGG-G--TCGGTAATGGAGGTTCATGGAGTCACAGCTC 1195
Query 1199 CACAAGCAGATGTGGAGGTTTTCTTTAAAGTGAGTGGTTTAGACTTAGAGAAAGCAGATG 1258
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1196 CACAAGCAGATGTGGAAGTTTTCTTCAAAGTGAGTGGTTTTGACTTAGAGAAAGCAGATG 1255
Query 1259 TGATTGAACCGGGCTGGACCGATCCACAATTGATTTGCAGTGAGAAGAATGCATCGTTTG 1318
||||||||||||||||||||||||| |||||||| |||||| ||| |||||| ||
Sbjct 1256 TGATTGAACCGGGCTGGACCGATCCGCAATTGATCTGCAGTCAGAGGAATGCGTC----- 1310
Query 1319 TTAATTCCGGTTTAGGCCCATTCGGTTTAATGGTTCTTGCTTCCAAGGACATGGAAGAGT 1378
| | | |||||||| |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1311 --A-T-CAGGTTTAGGTCCATTCGGTTTAATGGTTCTAGCTTCCAAGAACATGGAAGAGT 1366
Query 1379 ATACATCGGTCAATTTCAGAATCTTTAGAGCTCGTGGGAATAATAAGGAGCACGTAGTGG 1438
|||||||||||||| |||||||||| |||||| ||| ||||| |||||||||||||||||
Sbjct 1367 ATACATCGGTCAATATCAGAATCTTCAGAGCTGGTGAGAATAGTAAGGAGCACGTAGTGG 1426
Query 1439 TCATGTGCAGTGACCAAAGCAGATCAAGTTTAGAGAAAGGGAATGATAAAACAACATATG 1498
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1427 TCATGTGCAGTGACCAAAGCACATCAAGTTTAGAGAAAGGGAATGATAAAACAACTTATG 1486
Query 1499 GTGCTTTTATGGATATCTCTCCTTATCAACCAATCTCTCTCAGGACTTTGATTGATAAAT 1558
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GTGCTTTTTTAGATATCTCTCCTTATCAACCAATCTCTCTCAGGACTTTGATTGATAAAT 1546
Query 1559 CAATAGTGGAGAGCTTTGGTGGAAAAGGGAAAACATGTATTACCTCAAGAGTATATCCAA 1618
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1547 CAATAGTGGAGAGCTTTGGTGGGAAAGGGAAAACATGTATTACCTCGAGAGTTTATCCAA 1606
Query 1619 AATTGGCAACAGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTG 1678
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 AATTGGCAATAGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTA 1666
Query 1679 ATATCTTAAGCCTAAGTGCTTGGAGCATGAAGTCTTCTCTTTAA 1722
|| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1667 ATGTTTTAAGCCTAAGTGCTTGGAGCATGAAGTCTTCTCTTTAA 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5