BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342253
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21070.1 | Symbols: NADK1, ATNADK-1 | NAD kinase 1 | chr3:73... 2431 0.0
> AT3G21070.1 | Symbols: NADK1, ATNADK-1 | NAD kinase 1 | chr3:7380191-7383980
REVERSE LENGTH=1942
Length=1942
Score = 2431 bits (1316), Expect = 0.0
Identities = 1455/1519 (96%), Gaps = 22/1519 (1%)
Strand=Plus/Plus
Query 5 CAGAGAATGGTTTCAGTCATTTGACTTCACTTGCTCAATCAGAGAAGGCTGTTCAGGAGC 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGAGAATGGTTTCACTCATTTGACTTCACTTGCTCAATCAGAGAAGGCTGTTCAGGAGC 239
Query 65 TTCTTCTTCAGCAGACTCCTATGCAGGCTACTGATGACCATCTCATTGAGTTTTCAGAGG 124
|||||||||| ||||||||||||||||||||||| ||||||||| ||||||| || ||||
Sbjct 240 TTCTTCTTCAACAGACTCCTATGCAGGCTACTGACGACCATCTCGTTGAGTTCTCTGAGG 299
Query 125 CTTTGAGAACTGTTGCAAAGGCACTAAGAGGAGCTGCTGAAGGAAAGGCGTTGGCTCAAG 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CTTTGAGAACTGTTGCAAAGGCACTAAGGGGAGCTGCTGAAGGAAAGGCGTTGGCTCAAG 359
Query 185 CTGAGGCTGCTGAATGGAAGCGTCGATACGAGTTAGAGAGGTCGAAGAACGTAGAGTTGC 244
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 360 CTGAGGCTGCTGAATGGAAGCGTAGATACGAGTTAGAGAGGTCTAAGAACGTGGAGTTGC 419
Query 245 AGCATAAAGAACTGTCGAATGGAGTGTGTGCCAATGAATCTAATAGTCAAAGGATAGAGC 304
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 420 AGCATAAAGAACTGTCAAATGGAGTGTGTGCCGATGAATCTAATGGTCAAAGGATGGAGC 479
Query 305 ACTTAGCAAAGTCTCCGCGGCTTTATGCTCAGGAAAACAGTTCTAATGGCATGGAG-CGT 363
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 480 ACTTAGCAAAGTCTCCGCGGCTTTATGCTCAGGAAATCAGTTCTAATGGCATGGAGAC-T 538
Query 364 ATTTGCTCTCATGAAGTGCTCCAAGATGGTGGATTTAACAGTTTTACTAACAAATTGAAG 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 ATTTGCTCTCATGAAGTGCTCCAAGATGGTGGATTTAACAGTTTTAATAACAAATTGAAG 598
Query 424 AGGAAGGCATCATTTAAACTTTCATGGGGATGTAAGGGGATGGCTAATGATCAACACAAA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGAAGGCATCATTTAAACTTTCATGGGGATGTAAGGGGATGGCTAATGATCAACACAAA 658
Query 484 AAAGAAATTGTTTCGTTCGAGAGAGGGAATATCAGTACAGCAGAGCGCAGTAGTAAACAG 543
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 AAAGAAATTGTTTCGTTTGAGAGAGGGAATATCAGCACAGCAGAGCGCAGTAGTAAACAG 718
Query 544 ATTTCATTGACATGGGAGTCTGATCCACAAACTGTGCTTATTATCACTAAACCTAATTCA 603
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 719 ATTTCACTGACATGGGAGTCTGATCCACAAACTGTACTTATTATCACTAAGCCTAATTCA 778
Query 604 ACTTCCGTGCGAGTTCTCTCTGTGGATATGGTCAGATGGTTGAGAACGCAAAAAGGACTA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTTCCGTGCGAGTTCTCTCTGTGGATATGGTCAGATGGTTGAGAACGCAAAAAGGACTA 838
Query 664 AATATTTATGTGGAACCTCGAGTAAAGGAAGAACTCTTATCAGAATCAAGTTCCTTCAAC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATATTTATGTGGAACCTCGAGTAAAGGAAGAACTCTTATCAGAATCAAGTTCCTTCAAC 898
Query 724 TTCGTACAAACTT-----G--G----GA---A-GAT---GACAAGGAAATTTCACTTCTA 765
||||||||||||| | | || | ||| |||||||||||||||||||||
Sbjct 899 TTCGTACAAACTTGGGAAGATGTTATGATTTATGATGCAGACAAGGAAATTTCACTTCTA 958
Query 766 CACACAAAAGTTGACCTTCTTATAACTCTTGGTGGGGACGGCACAGTGCTATGGGCAGCA 825
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 959 CACACAAAGGTTGACCTTCTTATAACTCTTGGTGGGGATGGCACAGTGCTATGGGCTGCA 1018
Query 826 TCGATGTTTAAAGGACCAGTGCCTCCAATTGTTCCATTCTCCATGGGATCTCTTGGATTT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCGATGTTTAAAGGACCAGTGCCTCCAATTGTTCCATTCTCCATGGGATCTCTTGGATTT 1078
Query 886 ATGACTCCTTTCCACAGCGAACAATACCGAGATTGTCTTGAAGCGGTTTTGAAAGGTCCA 945
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1079 ATGACTCCTTTTCACAGCGAACAATACCGAGATTGTCTTGAAGCGATTTTGAAGGGTCCT 1138
Query 946 ATCAGTATAACACTACGACACAGGTTGCAGTGTCACATCATCAGAGATAAAGCAACCA-A 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1139 ATCAGTATAACACTACGACACAGGTTGCAGTGTCACATCATCAGAGATAAAGCAA-CACA 1197
Query 1005 TGAATATGAAACAGAGGAGACTATGCTTGTTCTGAATGAAGTCACCATTGACCGTGGAAT 1064
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGAATATGAACCAGAGGAGACTATGCTTGTTCTGAATGAAGTCACCATTGACCGTGGAAT 1257
Query 1065 ATCTTCTTACCTCACAAACCTCGAATGCTACTGCGACAACTCATTCGTCACATGTGTGCA 1124
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1258 ATCTTCTTACCTCACAAACCTTGAATGCTACTGTGACAACTCATTCGTCACATGTGTGCA 1317
Query 1125 AGGCGATGGACTAATATTGTCTACAACATCTGGTAGCACCGCGTATTCACTCGCTGCTGG 1184
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1318 AGGCGATGGACTTATACTGTCTACAACATCTGGTAGCACCGCGTATTCACTTGCTGCTGG 1377
Query 1185 AGGGTCAATGGTCCATCCTCAGGTTCCTGGGATCTTATTCACGCCTATCTGTCCGCATTC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGGGTCAATGGTCCATCCTCAGGTTCCTGGGATCTTATTCACGCCTATCTGTCCGCATTC 1437
Query 1245 TCTATCATTCCGCCCACTGATATTACCGGAACACGTGACAGTGAGAGTGCAAGTGCCATT 1304
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1438 TCTATCATTCCGCCCACTAATATTACCGGAACACGTGACAGTGAGAGTCCAAGTGCCATT 1497
Query 1305 CAACAGCAGAAGCTCCGCTTGGGTCTCCTTTGATGGGAAAGACCGGAAACAGCTTGAAGC 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CAACAGCAGAAGCTCCGCTTGGGTCTCCTTTGATGGGAAAGACCGGAAACAGCTTGAAGC 1557
Query 1365 AGGGGATGCACTAGTGTGTAGCATGGCACCATGGCCCGTCTCAACCGCTTGCCAAGTTGA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1558 AGGGGATGCACTAGTGTGTAGCATGGCACCATGGCCCGTCTCAACCGCTTGTCAAGTTGA 1617
Query 1425 ATCCACCAACGACTTCTTACGCAGCATCCACGATGGCCTTCACTGGAACCTAAGAAAGAC 1484
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1618 ATCCACTAACGACTTCTTACGCAGCATCCACGATGGTCTTCACTGGAACCTAAGAAAGAC 1677
Query 1485 TCAATCGGCTGACGGGCCT 1503
|||||| ||||| || |||
Sbjct 1678 TCAATCTGCTGATGGACCT 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5