BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342260
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21150.1 | Symbols: BBX32 | B-box 32 | chr3:7412636-7413539 ... 961 0.0
AT4G06613.1 | Symbols: | transposable element gene | chr4:3726... 350 2e-95
> AT3G21150.1 | Symbols: BBX32 | B-box 32 | chr3:7412636-7413539
REVERSE LENGTH=904
Length=904
Score = 961 bits (520), Expect = 0.0
Identities = 642/700 (92%), Gaps = 11/700 (2%)
Strand=Plus/Plus
Query 568 GAGATCGACTCAATGGTGAGCTTCTGCGAGCTATGTGGTGCCGAAGCTGATCTCCACTGC 627
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 138 GAGATCGACTCAATGGTGAGCTTTTGCGAGCTTTGTGGTGCCGAAGCTGATCTCCATTGT 197
Query 628 GCCGCGGACTCAGCTTTCCTCTGCCGTTCATGCGACGCTAAGTTCCATGGCTCAAATTTC 687
||||||||||| || |||||||||||||| || |||||||||||||||| |||||||||
Sbjct 198 GCCGCGGACTCTGCCTTCCTCTGCCGTTCTTGTGACGCTAAGTTCCATGCCTCAAATTTT 257
Query 688 CTCTTCGCTCGTCATTTCCGTCGCGTCATCTGCCCTAATTGCAAATCTCTCACTCAAGAT 747
|||||||||||||||||||| || ||||||||||| |||||||||||||| |||||| ||
Sbjct 258 CTCTTCGCTCGTCATTTCCGGCGTGTCATCTGCCCAAATTGCAAATCTCTTACTCAAAAT 317
Query 748 TTCGTTTCTGGTCCTCTTCTTCCTTGGCCTCCACGAACAACCTGCTGTTCTGAATCATCG 807
||||||||||||||||||||||||||||||||||||||||| || ||||| | | ||||
Sbjct 318 TTCGTTTCTGGTCCTCTTCTTCCTTGGCCTCCACGAACAACATGTTGTTCAG-A--ATCG 374
Query 808 TCTTCGTCTTCGTCTTGCTGCTCGTCTCTTGACTGTGTCTCAAGCTCCGAGCTATCGTCG 867
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ---TCGTCTTCTTCTTGCTGCTCGTCTCTTGACTGTGTCTCAAGCTCCGAGCTATCGTCA 431
Query 868 ACGACGGGTGGCGTAAACAGAGCGCGAGGGAGGGAAAACAGAGTGAAGGCTAAGGCCGTT 927
|||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 432 ACGACGCGTGACGTAAACAGAGCGCGAGGGAGGGAAAACAGAGTGAATGCCAAGGCCGTT 491
Query 928 GCGGTTACGGTGGCGGATGGCATTTTTGTAAATTGGTGTGGTAAATTAGGACTAAAGAGA 987
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 492 GCGGTTACGGTGGCGGATGGCATTTTTGTAAATTGGTGTGGTAAGTTAGGACTAAACAGG 551
Query 988 GATTTAACAAACGCTGTCGTTTCGTATGCGTCACTCGCTTTGTCTGTGGCGGAGACGAAG 1047
||||||||||||||||||||||| |||||||| | |||||| |||| |||||||| |
Sbjct 552 GATTTAACAAACGCTGTCGTTTCATATGCGTCTTTGGCTTTGGCTGT---GGAGACGAGG 608
Query 1048 CCGAGAGCGACGAAGAGGGTGATT-TTAGCGGCAGCGTTTTGGTTCGGCGTTAAGAACAC 1106
|| |||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||
Sbjct 609 CCAAGAGCGACGAAGAGAGTG-TTCTTAGCGGCGGCGTTTTGGTTCGGCGTTAAGAACAC 667
Query 1107 GATGAAGTGGCAGAGTTTAAAGAAGGTGGAAGATGTGACGGGAGTTGCAGCTGGGATGAT 1166
|| || |||||||| ||||||||| || ||||||||||| |||||| |||||||||||||
Sbjct 668 GACGACGTGGCAGAATTTAAAGAAAGTAGAAGATGTGACTGGAGTTTCAGCTGGGATGAT 727
Query 1167 TCGAGCGGTTGAAAGCAAAATGGCCCGTGTAATGACGCTGCAGCTTAGACGGTGGCGCGT 1226
||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||
Sbjct 728 TCGAGCGGTTGAAAGCAAATTGGCGCGTGCAATGACGCAGCAGCTTAGACGGTGGCGCGT 787
Query 1227 GGATTCGGAGGAAGGATGGGCTGAAAACGACAACGTTTGA 1266
||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GGATTCGGAGGAAGGATGGGCTGAAAACGACAACGTTTGA 827
> AT4G06613.1 | Symbols: | transposable element gene | chr4:3726950-3728845
FORWARD LENGTH=1896
Length=1896
Score = 350 bits (189), Expect = 2e-95
Identities = 300/352 (85%), Gaps = 13/352 (4%)
Strand=Plus/Plus
Query 172 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 230
|||||||||||||| |||| ||||||| ||||||||||| |||| | |||||||||||||
Sbjct 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77
Query 231 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 290
||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || ||||
Sbjct 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137
Query 291 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 349
||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196
Query 350 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 406
|| ||||||| || |||||||| ||| | || | || ||| |||||| ||||||
Sbjct 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253
Query 407 CAGTCAAAACTGGAACAAGTGCTATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 466
| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313
Query 467 TGTATGA-GAG--TGATAATCAGAAAGTGTTAGCTGGAGATAGCAGTGGTGT 515
||||||| ||| |||||| |||||| | ||||||| ||||||||||||||
Sbjct 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGT 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5