BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342288
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21390.1 | Symbols: | Mitochondrial substrate carrier famil... 1266 0.0
> AT3G21390.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:7531402-7534544 FORWARD LENGTH=1357
Length=1357
Score = 1266 bits (685), Expect = 0.0
Identities = 739/766 (96%), Gaps = 0/766 (0%)
Strand=Plus/Plus
Query 165 GGGTTTTTGGCGTGGAAATGTCCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACA 224
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 473 GGGTTTCTGGCGTGGAAATGTTCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACA 532
Query 225 ATTTGCAGTTTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCA 284
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ATTTGCAGTCTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCA 592
Query 285 TGCTCAACTGAGCCCTTATCTTTCATACATTAGCGGGGCACTAGCAGGGTGTGCAGCAAC 344
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 593 TGCTCAACTGAGCCCTTATCTTTCTTACATCAGTGGGGCACTAGCAGGGTGTGCAGCAAC 652
Query 345 AGTTGGATCGTATCCATTTGACCTATTGCGGACTGTATTAGCTTCCCAGGGTGAGCCAAA 404
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 653 AGTTGGATCGTATCCGTTTGACCTATTGCGGACTGTATTGGCGTCCCAGGGTGAGCCAAA 712
Query 405 GGTATATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGG 464
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GGTGTATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGG 772
Query 465 GTTGTATGCAGGATTGTCCCCAACTTTGATCGAGATAATTCCTTATGCTGGTCTGCAGTT 524
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 773 GTTGTATGCAGGATTGTCCCCTACTCTGATCGAGATCATTCCTTATGCTGGTCTGCAGTT 832
Query 525 CGGCACTTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCATC 584
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 TGGCACCTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCTTC 892
Query 585 TTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTCTTCCTTTCCGG 644
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 893 TTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTTTTCCTTTGCGG 952
Query 645 TTTAGCTTCTGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAG 704
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TTTAGCTTCGGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAG 1012
Query 705 ATTCCAAGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTAAATGC 764
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1013 ATTCCAGGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTGAATGC 1072
Query 765 TTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCAGAAGGTTGGCACGGCCT 824
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1073 TTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCTGAAGGTTGGCACGGGCT 1132
Query 825 CTACAAAGGCATTGTTCCATCAACCATCAAAGCTGCACCTGCTGGTGCTGTAACATTTGT 884
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1133 TTATAAAGGCATTGTTCCATCAACCATTAAAGCTGCACCTGCTGGTGCTGTAACATTTGT 1192
Query 885 GGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACATGA 930
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1193 GGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACCTGA 1238
Score = 239 bits (129), Expect = 4e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 11 GTTATAGCAAGGAGCTGGTGATCATGAGTGGTACAGAGTTAGAAGAGCCTGGACAGTTAA 70
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 208 GTTATAGCAAGGAGCTCGTGATCATGAGTGGTACAGAGTTAGATGAGCCTGGAAAGTTAA 267
Query 71 AACGTGCTGTGATAGATGCTTCAGCTGGTGCTGTTGCTGGTGCCATTTCACGTATGGTTA 130
|||||||||| || |||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct 268 AACGTGCTGTCATTGATGCTTCTGCTGGTGGTGTTGCTGGTGCGATTTCACGTATGGTTA 327
Query 131 CCTCTCCTCTTGATGTTATCAAGATTAGATTTCAGG 166
||||||| ||||||||||||||||||||||||||||
Sbjct 328 CCTCTCCCCTTGATGTTATCAAGATTAGATTTCAGG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5