BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342328
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21780.1 | Symbols: UGT71B6 | UDP-glucosyl transferase 71B6 ... 819 0.0
AT3G21781.1 | Symbols: | other RNA | chr3:7676054-7676384 FORW... 396 3e-109
> AT3G21780.1 | Symbols: UGT71B6 | UDP-glucosyl transferase 71B6
| chr3:7675004-7676494 REVERSE LENGTH=1491
Length=1491
Score = 819 bits (443), Expect = 0.0
Identities = 619/701 (88%), Gaps = 23/701 (3%)
Strand=Plus/Plus
Query 1 ATGAAAATTGAGCTAATATTGATTCCTTCTCCCGCGATCAGTCATCTCATGTCTACGGTG 60
|||||||| |||||| |||| ||||| ||||| || || |||||||||||| | |||||
Sbjct 5 ATGAAAATAGAGCTAGTATTCATTCCCTCTCCGGCAATTAGTCATCTCATGGCGACGGTA 64
Query 61 GAGATGGCGGAGCGACTAGTTGATCTAAACGACCACCTCTCTATCACCGTAATCATCATA 120
||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 65 GAGATGGCGGAGCAACTAGTTGATAAAAACGACAACCTCTCTATCACCGTAATCATCATA 124
Query 121 TCTTTCAATTCTCAAAGCACCTCGATGATCGCCTCTCTCACCACCGCATCCAATAAACGA 180
||||| | |||| ||| || || |||||| ||||||| | ||||||| || ||
Sbjct 125 TCTTTTAGTTCTAAAAATACATCCATGATCACCTCTCT---TA---CATCCAACAACCGC 178
Query 181 ATCCGCTACGAAATAATCTCTGGAGGAGATCAACAACCCACAGAGCTCAGAGCGACTGAT 240
|||| |||||||||||||| ||||||||||||||||| || ||||||| ||| ||||||
Sbjct 179 CTCCGGTACGAAATAATCTCCGGAGGAGATCAACAACCAACGGAGCTCAAAGCAACTGAT 238
Query 241 TCCCACATCCAAAGTCTAAAGCCACTGGTGAGAGATGCTGTTGCGAAACTCGTAGAT-CC 299
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||
Sbjct 239 TCCCACATCCAAAGTCTAAAGCCACTGGTGAGAGACGCGGTTGCTAAACTCGTAGATTCC 298
Query 300 GACTCGACCAGACTTGCCTCGTCTTGCGGGATTCGTCGTCGACATGTACTGCACGTCGAT 359
|||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 299 -ACTCTACCAGACGCGCCTCGTCTTGCGGGATTCGTTGTTGACATGTACTGCACGTCGAT 357
Query 360 GATCGATGTCGCTGACGAATTTGGAGTCCCTAGTTACTTGTTTTACACCTCCAATGCTGG 419
||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 358 GATCGATGTCGCTAACGAATTTGGCGTCCCTAGTTACTTGTTTTACACCTCTAACGCTGG 417
Query 420 ATTTCTCGGACTTTTGCTTCACATTCAATTCATGTACGACTTAGAGTCAGAGGATACCTA 479
|||||| |||||||||||||||||||| ||||||||||| | | ||||||||| |||
Sbjct 418 ATTTCTTGGACTTTTGCTTCACATTCAGTTCATGTACGA-T--G---CAGAGGATATCTA 471
Query 480 TGACATGAGTGGATTAGAAGACTCGGACGCAGAGTTGGTGGTTCCGAGTTTGATTAATCC 539
||||||||| | |||||||||||| |||| ||||||||||||||||||||||| || |||
Sbjct 472 TGACATGAGCGAATTAGAAGACTCTGACGTAGAGTTGGTGGTTCCGAGTTTGACTAGTCC 531
Query 540 TTATCCGTTGAAATGTGTCTTCCTTAATCCTTACATTTTCAAATCAAAAGAGTGGCTCAC 599
|||||||||||||||| |||||||| | | |||||||||||||||||||||||||
Sbjct 532 TTATCCGTTGAAATGT--CTTCCTTA--C---A--TTTTCAAATCAAAAGAGTGGCTCAC 582
Query 600 tttttttGTAACTCAAGCGAGAAGATTCAGAGAGACTAAGGGCATTTTGGTAAATACGGT 659
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 583 TTTTTTTGTAACTCAAGCGAGAAGATTCAGAGAAACTAAGGGCATTTTGGTAAACACGGT 642
Query 660 TCCTGACTTGGAGCCTCAAGCGTTGAAGTTTCTCTCCAATG 700
|||||||||||| ||||||||||||| |||||| |||||||
Sbjct 643 TCCTGACTTGGAACCTCAAGCGTTGACGTTTCTTTCCAATG 683
Score = 595 bits (322), Expect = 3e-169
Identities = 424/473 (90%), Gaps = 8/473 (2%)
Strand=Plus/Plus
Query 700 GTGTTCCTCTGCTTCGGGAGTATGGGAGGCTTCAGTGACGAACAAGCAAGAGAAATCGCC 759
||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||| |||
Sbjct 809 GTGTTCCTCTGTTTCGGGAGCATGGGAGGGTTCAGTGAGGAACAAGTGAGAGAAACCGCA 868
Query 760 GTAGCTCTGGATCGAAGCGGCCACCGGTTTCTCTGGTCTCTCCGCCGTGCATCTCCGAAT 819
||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 869 TTAGCTCTCGATCGAAGCGGCCACCGGTTTCTTTGGTCTCTCCGTCGTGCATCTCCGAAT 928
Query 820 ATAATGAAAGAGCCTCCCGGAGAATTCACTAACCTAGACGAGATTCTCCCGGAAGGGTTT 879
||| ||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 929 ATATTGAGAGAGCCTCCCGGAGAATTCACAAACCTAGAGGAGATTCTCCCAGAAGGGTTT 988
Query 880 CTT-GATCGGACGAAGGAGAGGGGAAACGTGATCGGATGGGCTCCACAAGTGGCCGTGTT 938
|| ||||||||| | || ||||| || |||||||||||| ||| |||||| | ||
Sbjct 989 -TTCGATCGGACGGCTAACAGAGGAAAGGTTATCGGATGGGCTGAACAGGTGGCCATATT 1047
Query 939 GGCGAAGCCGGCGATCGGGGGTTTTGTTTCTCACGGTGGATGGAATTCAACGTTGGAGAG 998
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1048 GGCGAAGCCGGCGATCGGAGGTTTTGTTTCTCACGGCGGATGGAATTCGACGTTGGAGAG 1107
Query 999 TTTGTGGTTTGGTGTTCCGATGGCGATTTGGCCGCTTTACGCCGAACAGAAGTTTAACGC 1058
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1108 TTTGTGGTTTGGTGTTCCGATGGCGATTTGGCCGCTTTACGCTGAACAGAAGTTTAACGC 1167
Query 1059 TTTTGAGATGGTGGAGGAGCTTGGCTTGGCGGTGGAGATCAAGAATCACTGGCGAGGAGA 1118
||| ||||||||||| |||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 1168 TTTCGAGATGGTGGAAGAGCTTGGTTTGGCTGTGGAGATCAAGAAGCATTGGCGAGGAGA 1227
Query 1119 TCTTTTGTTGGGGAGGTCGGAGATGGAGATTGTGACGGCGGAGGAGATAGAGA 1171
|||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 1228 TCTTTTGTTGGGGAGGTCGGAGAT-----T-GTGACGGCGGAGGAGATTGAGA 1274
> AT3G21781.1 | Symbols: | other RNA | chr3:7676054-7676384 FORWARD
LENGTH=331
Length=331
Score = 396 bits (214), Expect = 3e-109
Identities = 298/338 (88%), Gaps = 8/338 (2%)
Strand=Plus/Minus
Query 107 CCGTAATCATCATATCTTTCAATTCTCAAAGCACCTCGATGATCGCCTCTCTCACCACCG 166
||||||||||||||||||| | |||| ||| || || |||||| ||||||| |
Sbjct 331 CCGTAATCATCATATCTTTTAGTTCTAAAAATACATCCATGATCACCTCTCT---TA--- 278
Query 167 CATCCAATAAACGAATCCGCTACGAAATAATCTCTGGAGGAGATCAACAACCCACAGAGC 226
||||||| || || |||| |||||||||||||| ||||||||||||||||| || ||||
Sbjct 277 CATCCAACAACCGCCTCCGGTACGAAATAATCTCCGGAGGAGATCAACAACCAACGGAGC 218
Query 227 TCAGAGCGACTGATTCCCACATCCAAAGTCTAAAGCCACTGGTGAGAGATGCTGTTGCGA 286
||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 217 TCAAAGCAACTGATTCCCACATCCAAAGTCTAAAGCCACTGGTGAGAGACGCGGTTGCTA 158
Query 287 AACTCGTAGAT-CCGACTCGACCAGACTTGCCTCGTCTTGCGGGATTCGTCGTCGACATG 345
||||||||||| || |||| ||||||| ||||||||||||||||||||| || ||||||
Sbjct 157 AACTCGTAGATTCC-ACTCTACCAGACGCGCCTCGTCTTGCGGGATTCGTTGTTGACATG 99
Query 346 TACTGCACGTCGATGATCGATGTCGCTGACGAATTTGGAGTCCCTAGTTACTTGTTTTAC 405
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 98 TACTGCACGTCGATGATCGATGTCGCTAACGAATTTGGCGTCCCTAGTTACTTGTTTTAC 39
Query 406 ACCTCCAATGCTGGATTTCTCGGACTTTTGCTTCACAT 443
||||| || ||||||||||| |||||||||||||||||
Sbjct 38 ACCTCTAACGCTGGATTTCTTGGACTTTTGCTTCACAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5