BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342616 Length=1494 Score E Sequences producing significant alignments: (Bits) Value AT3G24530.1 | Symbols: | AAA-type ATPase family protein / anky... 1757 0.0 > AT3G24530.1 | Symbols: | AAA-type ATPase family protein / ankyrin repeat family protein | chr3:8945425-8947938 REVERSE LENGTH=1851 Length=1851 Score = 1757 bits (951), Expect = 0.0 Identities = 1049/1097 (96%), Gaps = 3/1097 (0%) Strand=Plus/Plus Query 400 CAG-AACGGTATGACACCATTGCACCTTGCGGTATGGTACTCAATTACTGCGAAAGACAT 458 ||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct 503 CAGCAATGGTATGACACCGTTGCATCTTGCGGTATGGTACTCAATTACTGCTAAAGAGAT 562 Query 459 CTCAACTGTTAAGACACTGCTTGATCATAACGCAGATTGCAGCGCAAAAGATAATGAAGG 518 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 563 CTCGACTGTTAAGACACTGCTTGATCATAACGCAGATTGCAGTGCAAAAGATAATGAAGG 622 Query 519 GATGACTCCTTTGGACCATCTGCCTCAAGGACAAGGCAGTGAGAAGTTACGGGAATTGTT 578 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 623 GATGACTCCTTTGGACCATCTGCCTCAAGGGCAAGGCAGTGAGAAGTTACGGGAATTACT 682 Query 579 GCGCTGGTTTCTCCAAGAACAGAGGAAAAGAAGCGCGCTTGAGCAATGCGGTAAGACAAA 638 ||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 683 GCGGTGGTTTCTCCAAGAGCAGAGGAAAAGAAGTGCGCTTGAGCAATGTGGTAAGACAAA 742 Query 639 AGCCAAGATGGAACTACTTGAGGACGAGTTGTCAAATATTGTTGGACTAAGTGAGCTGAA 698 |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| Sbjct 743 AGCCAAGATGGAACTACTTGAGGATGAGTTATCAAATATTGTTGGATTAAGTGAGCTGAA 802 Query 699 GACACAATTGAGGAAATGGGCAAAAGGAATGCTTTTAGATGAAAGGCGAAGGGCTCTTGG 758 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 803 GACACAACTGAGGAAATGGGCGAAAGGAATGCTTTTAGATGAAAGGCGAAGGGCTCTTGG 862 Query 759 GCTGAACATTGGAACCCGAAGACCTCCGCATATGGCATTTCTTGGAAACCCTGGAACAGG 818 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 863 GCTAAATATTGGAACCCGAAGACCTCCGCATATGGCATTTCTTGGAAACCCTGGAACAGG 922 Query 819 TAAAACCATGGTAGCTCGAGTTCTTGGGAAGTTGCTTAACACGGTTGGAATTTTACCAAC 878 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 923 TAAAACCATGGTAGCTCGAGTTCTCGGGAAGCTGCTTAACACGGTTGGAATTTTACCAAC 982 Query 879 TGATAAGGCAACAGAAGTACAGCGTACAGACTTGGTTGGTGAGTTTGTTGGCCATACAGG 938 |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 983 TGATAAGGTAACAGAAGTACAGCGTACAGATTTGGTGGGTGAGTTTGTTGGCCATACAGG 1042 Query 939 ACCAAAGACCAGGAGAAAGATCCAAGAAGCTGAGGGAGGAATTCTGTTTGTCGATGAAGC 998 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1043 ACCAAAGACCAGGAGAAAGATCCAAGAAGCTGAGGGAGGAATTCTGTTTGTGGATGAAGC 1102 Query 999 ATACAGATTGATCCCGATGCAAAAGGCGGACGACAAGGACTACGGTCTAGAAGCTCTGGA 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 ATACAGATTGATCCCGATGCAAAAGGCGGACGACAAGGACTACGGTCTAGAAGCTCTGGA 1162 Query 1059 AGAAATCATGTCGGTCATGGACACAGGGAAAATCGTGGTGATATTCGCGGGATACAGTGA 1118 |||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| || Sbjct 1163 AGAAATCATGTCAGTCATGGACACAGGGAAAATTGTGGTGATATTTGCAGGATACAGCGA 1222 Query 1119 GCCCATGAAGCGTGTGATCGCATCAAACGAAGGGTTTTGCAGAAGGGTCACAAAGTTTTT 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1223 GCCCATGAAGCGTGTGATCGCATCAAACGAAGGGTTTTGCAGAAGGGTCACAAAGTTTTT 1282 Query 1179 CAATTTCAGCGACTTCAGTGCCAAGGAACTAGCGCAGATACTACACATCAAGATGAACAA 1238 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1283 CAATTTCAGCGACTTCAGTGCCAAGGAACTGGCGCAGATACTACACATCAAGATGAACAA 1342 Query 1239 CCAAGGAGAGGACACTCTGTTCTACGGCTTCAGATTGCATGAGTCTTGCACTCTGCAGGA 1298 |||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||| Sbjct 1343 CCAAGGAGAGGACACTCTGTTCTATGGTTTCAGATTGCATGAGTCCTGCACTTTGCAGGA 1402 Query 1299 GATAGCGTCACTGATAGAGGCAGAAACAACCGAGAAGCAGAG-AAAGGAGATGAACGGAG 1357 |||||||||||||||||||||||||||||| || |||||||| |||| ||||||| |||| Sbjct 1403 GATAGCGTCACTGATAGAGGCAGAAACAACGGAAAAGCAGAGGAAAG-AGATGAATGGAG 1461 Query 1358 GATTGGTGGACACGTTACTTGTTAACGCGAGGGAGAATCTTGATCTCCGACTTAGCTTTG 1417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1462 GATTGGTGGACACGTTACTTGTTAACGCGAGGGAGAATCTTGATCTCCGACTTAGCTTTG 1521 Query 1418 AATGTGTTGACACTGAAGAGATTTGTACAATCAAGTTGGAAGACCTAGATGCTGGGCTTC 1477 | |||||||||||||||||||||||||||||||||||||| || ||||| || ||||||| Sbjct 1522 AGTGTGTTGACACTGAAGAGATTTGTACAATCAAGTTGGAGGATCTAGAGGCCGGGCTTC 1581 Query 1478 GAGTTTTCTCGCAGTGA 1494 ||||||||||||||||| Sbjct 1582 GAGTTTTCTCGCAGTGA 1598 Score = 577 bits (312), Expect = 1e-163 Identities = 341/355 (96%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 1 ATGAACCGACAAAACGGTGGAGGACAGCGGCTGAGATCCGCTAGACCCACCACAATTCAC 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 153 ATGAACCGACAAAACGGTGGAGGGCAGCGGCTGAGATCCGCTAGACCCACCACAATTCAC 212 Query 61 GATTGTGCTCTCTCCGGTGATCTTATTGCTTTGCAGAGACTTCTTAAAGACAATCCTTCT 120 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 213 GATTGTGCTCTCTCCGGCGATCTTATTGCTTTACAGAGACTTCTTAAAGACAATCCTTCT 272 Query 121 CTTCTCAATGAACGCAATCCCGTCATGTATCACACGCCTCTTCATGTTTCTGCTGGTAAT 180 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 273 CTTCTCAATGAACGCAATCCCGTCATGTATCATACGCCACTTCATGTTTCTGCTGGTAAT 332 Query 181 GGTAATGTTGATATAGTTAAGTATCTTCTTGCTTGGACTGGATCTGAGAAAGTTGAGTTA 240 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 333 GGTAATGTTGATATTGTTAAGTATCTTCTCGCTTGGACTGGATCTGATAAAGTTGAGTTA 392 Query 241 GAAGCAATGAATACTTATGGTGAGACTCCATTGCATATGGCAGCAAAGAACGGTTGCAAC 300 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 393 GAAGCAATGAATACTTATGGTGAGACTCCATTGCATATGGCAGCTAAGAACGGTTGTAAT 452 Query 301 GAAGCTGCGAAGCTACTCCTTGAGCA-TGGTGCTTTTATCGAAGCTAAAGCCAGC 354 |||||||| ||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 453 GAAGCTGCAAAGCTACTCCTTGAG-AGTGGTGCTTTTATCGAAGCTAAAGCCAGC 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73694400060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5