BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342651
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24750.1 | Symbols: | unknown protein; Has 25 Blast hits to... 1234 0.0
> AT3G24750.1 | Symbols: | unknown protein; Has 25 Blast hits
to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa
- 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:9036268-9037757 FORWARD
LENGTH=970
Length=970
Score = 1234 bits (668), Expect = 0.0
Identities = 733/765 (96%), Gaps = 2/765 (0%)
Strand=Plus/Plus
Query 5 AGATCTTTCAATGGCTCTTCAAGTTAGGGAGATCAGAGCCCAGTTCAATCAATTGTACTG 64
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 5 AGATCTTTCAATGGCTCTTCAAGTTAGGGAGATCAGAGCCTAGTTCCATCAATTGTACTG 64
Query 65 ATCATGAACCCACCACAACTCTAACAAATTGCACAGTTCACAGAACAAGAAGATCATCTA 124
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 65 ATCATGAACCCACCACAACTCTAACAAATTGTAAAGATCACAGAACAAGAAGATCATCTA 124
Query 125 CAAGAGGGTCTAAACATAAAAACCAGAGGAGTTATAGAGGAATCTGGTTATGGTGTAGAA 184
||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 125 CAAGAGGTTCTAAACATAAAGACCAAAGGAGCTATAGAGGAATCTGGTTATGGTGTAGAA 184
Query 185 AAGACGTAGCCAAGGCTTGTTTCTCTAGCACACTGACTTTAAGAAGACTTAATAGCTTTA 244
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 185 AAGACGTAGCCAAGGCTTGTTTCTCTAGCACTTTTACTTTAAGAAGACTTAATAGCTTTA 244
Query 245 GGAGAGGACATTTACTTGGCTCCATGGCAAAGATAAAAGCACAAGGAGGAGAAGAACAAG 304
||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 245 GGAGAGGGCATTTGCTTCGCTCCATGGCAAAGATAAAAGCGCAAGGAGGAGAAGAACAAG 304
Query 305 TGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAAAGTCTT-CAAACCGGAGAAACAA 363
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 305 TGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAGAGTCTTGC-AACCGGAGAAACAA 363
Query 364 GACGAAACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTTA 423
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 GACGATACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTCA 423
Query 424 AGAATGAAGGAGCTCATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCGGTCAAATTC 483
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 424 AGAATGAAGGAGCTTATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCTGTCAAATTC 483
Query 484 TTTACCCCTAAGATAATGATGGAGTTGAGAAACCGAAGAAAGTTGAAGATGATGAGAGAG 543
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 TTTACCCCTAAGATAATGATGGAGTTGAAAAACCGAAGAAAGTTGAAGATGATGAGAGAA 543
Query 544 GTGAATGAAGAAGAATCAACTAAAAGAATGAGTAGTGTATCTGCAAATATAAGTTTGAGA 603
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 544 GTCAATGAAGAAGAATCAACAAAAAGGATGAGTAGTGTATCTGCAAATATAAGTTTGAGA 603
Query 604 TGGGAGAGTAGTGAGAGTTGCACAACAATCTCTTCCTCTGATCACATCTCTATAGTTTCT 663
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 604 TGGGAGAGTAGTGAGAGTTGCACAACAAACTCTTCCTCTGATCACATCTCTATAGTTTCT 663
Query 664 TCACCAGCAATCCTTGTTTCCTTGAGTCCTACGCCACTCCACCGATGTAGATCCAGGAAA 723
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 TCACCAGGAATCCTTGTTTCCTTGAGTCCTACGCCACTCTACCGATGTAGATCCAGGAAA 723
Query 724 TACAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTA 768
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TGCAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5