BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343424
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1371 0.0
> AT5G63040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48460.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:25288215-25290377 FORWARD LENGTH=1441
Length=1441
Score = 1371 bits (742), Expect = 0.0
Identities = 879/945 (93%), Gaps = 10/945 (1%)
Strand=Plus/Plus
Query 283 TCTCTTCACATTTCCTTC-AGAGACCAAAATCCAAGAGAAGTCTTCCAAAAGAGAGTTTA 341
||||||||||||||| || |||| |||||| ||||| ||||||| || ||||||| |||
Sbjct 449 TCTCTTCACATTTCC-TCAAGAGGCCAAAAACCAAGCGAAGTCTCCCGAAAGAGAACTTA 507
Query 342 TTTGCCTTTTGCGACTTCAGAAGAACAGTTCCAGTACACTGACCAAAC-ACTCGACAATC 400
||||||| |||| |||||||||||| ||||||| |||||||| | || || | |||
Sbjct 508 TTTGCCTCTTGCTACTTCAGAAGAAAAGTTCCACTACACTGAAGATACAAC-AAATGATC 566
Query 401 CAGAAACAACAAGTCCCCAAATTCGCCCCGAAGCTACACCTCGAGATGGTAG-TTCAACT 459
|||| ||| ||||||||||||| || |||||||||||||| |||||| | | |||||||
Sbjct 567 CAGACACAGTAAGTCCCCAAATTGGCACCGAAGCTACACCTAGAGATGAT-GATTCAACT 625
Query 460 ATCCAATACAATGGAAATGACGGAAAACCGGGTTTCATTTCGTTTTACAATCCTCGGAAT 519
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 626 ATCCAATACAATAGAAATGACGGGAAACCGGGTTTCATTTCGTTTTACAATCCTCGGAAT 685
Query 520 AAAACAGAGGATATCATTGTCCCTCCTGAATCACAAAGTACATGGGGACGCCTGCTCTGG 579
||||| |||||||||||| |||| |||||| | |||||| ||||||||||||||||||||
Sbjct 686 AAAACTGAGGATATCATTATCCCCCCTGAAACTCAAAGTCCATGGGGACGCCTGCTCTGG 745
Query 580 CTCATTGGTCCTGCTGTCTTAGTTTCCTCTTTCATTTTGCCTCCAATTTACTTACGAAGA 639
|||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 746 CTCATTGGTCCTGCAGTCTTAGTCTCCTCTTTCATTTTACCTCCAGTTTACTTACGAAGA 805
Query 640 ATAGTCTCAGCAGTTTTTGAAGACTCTTTGCTCACAGACTTCCTCATCCTGTTCTTCACC 699
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 806 ATAGTCTCAGCAGTTTTTGAAGATTCTTTGCTCACAGACTTCCTCATCCTGTTCTTCACC 865
Query 700 GAGGCTCTCTTCTACTGTGGAGTCGCCGCATTTCTTCTGATAATAGACCGCTCAAGGAAA 759
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 866 GAGGCTCTCTTCTACTGCGGAGTCGCTGCATTTCTTCTGATAATAGACCGCTCAA-GAAA 924
Query 760 A-CATCCGGAAAAGTTCCCCAGAACCGTATCAATCCTTCTCAGTTAGGACAAAGAATCTC 818
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 925 AGGATCCGGAAAAGTTCCCCAGAACCGAATCAATCCTTCTCAGTTAGGACAAAGAATCTC 984
Query 819 CTCTGTAGCAACATTAGTGCTGAGTCTCATGATTCCAATGGTGACAATGGGATTCGTTTG 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 985 CTCTGTAGCAACATTAGTGCTGAGTCTCATGATTCCAATGGTGACAATGGGATTCGTCTG 1044
Query 879 GCCATGGACTGGACCTGCAGCATCAGCTACTCTTGCACCGTACCTCGTTGGTATCGTTGT 938
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1045 GCCATGGACTGGACCTGCAGCATCAGCTACTCTTGCACCATACCTCGTTGGTATCGTTGT 1104
Query 939 TCAGTTTGCATTCGAACAGTACTCAAGATA-CTGTAACTCTCCATCATCTCCTATCATCC 997
|||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 1105 TCAGTTTGCATTCGAACAGTACGCAAGATATC-GTAACTCTCCATCATCTCCTATCATCC 1163
Query 998 CCATCATCTTTCAGGTATACAGACTTCATCAGCTGAACAGAGCGGCACAATTAGTAACAG 1057
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 1164 CCATCATCTTTCAGGTATACAGACTTCATCAGCTGAACCGAGCGGCGCAACTAGTAACAG 1223
Query 1058 CATTGTCGTTTACGGTTAAAGGAGCAGAGGCAACAGTTAATAATCTGGCAATCAAGAAAT 1117
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 CATTGTCATTTACGGTTAAAGGAGCAGAGGCAACAGTTAATAATCTGGCAATCAAGAAAT 1283
Query 1118 CACTGGGTACACTTTTGAATGTGATACAAGTTTTAGGTGTGATTTCAATCTGGTCTATAT 1177
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1284 CACTGGGCACACTTTTGAATGTGATACAGGTTTTGGGTGTGATTTCAATCTGGTCTATAT 1343
Query 1178 CAAGCTTCCTCATGTGGTTATCGTCTCCTTCCCAAAATCAGTCTT 1222
| |||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1344 CTAGCTTCCTCATGTGGTTATCATCACCTTCCCAAAACCAGTCTT 1388
Score = 137 bits (74), Expect = 2e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCAAAACTTGTGTCCTCCTCGGCTTCTACTTTGGTTCCGTCCATTTTCTCACCG 60
|||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 290 ATGGCTGCTAAACTTGTGTCCTCCTCGGCTTCTTCTTTGGTTCCATCCATTTTCTCGCCG 349
Query 61 TTTCAACCTCGGAGTTCCTTTCAGTT 86
||||||||||||||||||||||||||
Sbjct 350 TTTCAACCTCGGAGTTCCTTTCAGTT 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5