BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg343774 Length=675 Score E Sequences producing significant alignments: (Bits) Value AT2G33800.1 | Symbols: | Ribosomal protein S5 family protein |... 701 0.0 AT2G44040.1 | Symbols: | Dihydrodipicolinate reductase, bacter... 156 3e-37 > AT2G33800.1 | Symbols: | Ribosomal protein S5 family protein | chr2:14300772-14302430 REVERSE LENGTH=1143 Length=1143 Score = 701 bits (379), Expect = 0.0 Identities = 441/469 (94%), Gaps = 12/469 (3%) Strand=Plus/Plus Query 219 AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAA 278 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 522 AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAA 581 Query 279 GTTTAGAGCTATTGTTGTTGTTGGTGATAAACAGGGGAATGTTCGTGTTGGTTGTGCTAA 338 |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 582 GTTTAGAGCTATCGTTGTTGTTGGTGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAA 641 Query 339 GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCCATTGATGCTAGGAGAAACATTGT 398 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 642 GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCTATTGATGCTAGGAGAAACATTGT 701 Query 399 TCAAGTTCCTATGACTAAGTACTCCACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC 458 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 702 TCAAGTTCCTATGACTAAGTATTCTACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC 761 Query 459 AGCCAAGGTGATGCTTAGACCGGCTTCACCAGGTACTGGTCTGATTGCTGGAGGAGCGGT 518 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 762 AGCCAAGGTGATGCTTAGACCTGCTTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGT 821 Query 519 CAGGATCGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAA 578 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 822 TAGGATTGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAA 881 Query 579 CAATGC----------G--AGAGCCACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCG 626 |||||| | |||||||||||||| ||||| |||||||||||||||||||| Sbjct 882 CAATGCTCTCAACAATGCGAGAGCCACTCTTGCAGCAGTACAACAGATGAGACAGTTCCG 941 Query 627 CGATGTTGCTCAAGAGCGTGGAATCCCCATGGAAGAACTCTGCAAGTGA 675 ||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 942 CGATGTTGCACAAGAGCGTGGAATCCCCATGGAAGAACTCTGGAAGTGA 990 > AT2G44040.1 | Symbols: | Dihydrodipicolinate reductase, bacterial/plant | chr2:18221769-18224104 REVERSE LENGTH=1366 Length=1366 Score = 156 bits (84), Expect = 3e-37 Identities = 116/131 (89%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 29 CGCGTATCGCATTTGCTTCTAGAACGAATCAGACTGCAGGAAA-TGGCGGTGAAGGTCGT 87 |||||||||||||||||||||||||||||||||||| |||||| | |||| |||| ||| Sbjct 156 CGCGTATCGCATTTGCTTCTAGAACGAATCAGACTGTAGGAAAATA-CGGTAAAGGCCGT 214 Query 88 GTTAGGTTCCCGGGCGTTGGGACACGTCGTCTTTCCGGTGGTTTTATCTATGAAGGCGAC 147 ||||| ||| |||| ||||||||||||||||| |||||||||||||| |||| ||||| Sbjct 215 GTTAGTTTCATGGGCATTGGGACACGTCGTCTT-CCGGTGGTTTTATCCATGACGGCGAT 273 Query 148 GGCAGATTCCG 158 ||| ||||||| Sbjct 274 GGCGGATTCCG 284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32652195550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5