BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343774

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein |...   701    0.0  
  AT2G44040.1 | Symbols:  | Dihydrodipicolinate reductase, bacter...   156    3e-37


> AT2G33800.1 | Symbols:  | Ribosomal protein S5 family protein 
| chr2:14300772-14302430 REVERSE LENGTH=1143
Length=1143

 Score =  701 bits (379),  Expect = 0.0
 Identities = 441/469 (94%), Gaps = 12/469 (3%)
 Strand=Plus/Plus

Query  219  AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAA  278
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  522  AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAA  581

Query  279  GTTTAGAGCTATTGTTGTTGTTGGTGATAAACAGGGGAATGTTCGTGTTGGTTGTGCTAA  338
            |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct  582  GTTTAGAGCTATCGTTGTTGTTGGTGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAA  641

Query  339  GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCCATTGATGCTAGGAGAAACATTGT  398
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  642  GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCTATTGATGCTAGGAGAAACATTGT  701

Query  399  TCAAGTTCCTATGACTAAGTACTCCACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC  458
            ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct  702  TCAAGTTCCTATGACTAAGTATTCTACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC  761

Query  459  AGCCAAGGTGATGCTTAGACCGGCTTCACCAGGTACTGGTCTGATTGCTGGAGGAGCGGT  518
            ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct  762  AGCCAAGGTGATGCTTAGACCTGCTTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGT  821

Query  519  CAGGATCGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAA  578
             ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  822  TAGGATTGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAA  881

Query  579  CAATGC----------G--AGAGCCACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCG  626
            ||||||          |  |||||||||||||| ||||| ||||||||||||||||||||
Sbjct  882  CAATGCTCTCAACAATGCGAGAGCCACTCTTGCAGCAGTACAACAGATGAGACAGTTCCG  941

Query  627  CGATGTTGCTCAAGAGCGTGGAATCCCCATGGAAGAACTCTGCAAGTGA  675
            ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  942  CGATGTTGCACAAGAGCGTGGAATCCCCATGGAAGAACTCTGGAAGTGA  990


> AT2G44040.1 | Symbols:  | Dihydrodipicolinate reductase, bacterial/plant 
| chr2:18221769-18224104 REVERSE LENGTH=1366
Length=1366

 Score =  156 bits (84),  Expect = 3e-37
 Identities = 116/131 (89%), Gaps = 3/131 (2%)
 Strand=Plus/Plus

Query  29   CGCGTATCGCATTTGCTTCTAGAACGAATCAGACTGCAGGAAA-TGGCGGTGAAGGTCGT  87
            |||||||||||||||||||||||||||||||||||| |||||| |  |||| |||| |||
Sbjct  156  CGCGTATCGCATTTGCTTCTAGAACGAATCAGACTGTAGGAAAATA-CGGTAAAGGCCGT  214

Query  88   GTTAGGTTCCCGGGCGTTGGGACACGTCGTCTTTCCGGTGGTTTTATCTATGAAGGCGAC  147
            ||||| |||  |||| ||||||||||||||||| |||||||||||||| |||| ||||| 
Sbjct  215  GTTAGTTTCATGGGCATTGGGACACGTCGTCTT-CCGGTGGTTTTATCCATGACGGCGAT  273

Query  148  GGCAGATTCCG  158
            ||| |||||||
Sbjct  274  GGCGGATTCCG  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5