BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344104
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25070.1 | Symbols: | Protein phosphatase 2C family protein... 1696 0.0
AT4G31860.1 | Symbols: | Protein phosphatase 2C family protein... 970 0.0
> AT2G25070.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:10663240-10665964 REVERSE LENGTH=1517
Length=1517
Score = 1696 bits (918), Expect = 0.0
Identities = 1019/1069 (95%), Gaps = 2/1069 (0%)
Strand=Plus/Plus
Query 1 ATGGGTACATACCTAAGTTCTCCTAAAACTGATAAGTTATCAGAAGATGGTGAGAATGAT 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 173 ATGGGTACATACCTAAGTTCTCCGAAAACTGAAAAGTTATCAGAAGATGGTGAGAATGAT 232
Query 61 AATCTCAGATATGGTTTATCGTCTATGCAAGGTTGGCGCGCTACCATGGAAGATGCGCAT 120
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 233 AAGCTCAGATTTGGTTTATCGTCTATGCAAGGTTGGCGCGCTACCATGGAAGACGCGCAT 292
Query 121 GCTGCAATTCTTGATCTGGATGATAAGACGTCGTTCTTCGGGGTGTACGATGGGCATGGG 180
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 293 GCTGCAATTCTTGATCTTGATGATAAGACATCGTTCTTCGGTGTGTATGATGGCCATGGA 352
Query 181 GGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATGAA 412
Query 241 GCATATAAAGCTGGAGACATAGAAACAGCTCTTCGAAGAGCATTTTTTAGAATGGATGAC 300
|| |||||| |||||||| | |||||| |||||||||||||||| |||||||||||||||
Sbjct 413 GCGTATAAAACTGGAGACGTCGAAACATCTCTTCGAAGAGCATTCTTTAGAATGGATGAC 472
Query 301 ATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTCGGTGACAAGATGAATAAA 360
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 473 ATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTTGGCGACAAGATGAACAAA 532
Query 361 TTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACTAATAAACAG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 533 TTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACCAATAACCAA 592
Query 421 CCCGATAATTGGCCTCTTGAGGATGGTCCTCATTCTGATTTCACGGGACCTACTTCGGGG 480
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 593 CCCGATAGTTGGCCTCTTGAAGATGGTCCTCATTCTGATTTCACGGGACCTACCTCGGGG 652
Query 481 TGCACAGCATGCGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCCGGTGAC 540
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGCACAGCGTGTGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCCGGTGAC 712
Query 541 TCACGTTGTGTGATATCAAGAAACAGTCAGGCTTACAATCTTTCTAAAGATCACAAGCCT 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 713 TCACGTTGTGTGATATCAAGAAAGAGTCAGGCTTACAATCTTTCTAAAGATCACAAGCCT 772
Query 601 GATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCTGGTAGA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 GATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCTGGGAGA 832
Query 661 ATCAATGGAAGCTTGAATCTGACAAGAGCCATTGGTGATATGGAATTCAAGCAGAACAAA 720
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 833 ATCAATGGAAGCTTGAATCTGACAAGAGCCATTGGTGATATGGAGTTCAAGCAGAATAAG 892
Query 721 TTTTTACCATCTGAAAAGCAAATGGTTACTGCTGATCCAGATATAAACACTATTGACCTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTTTTACCATCTGAAAAGCAAATGGTTACTGCTGATCCAGATATAAACACTATTGACCTA 952
Query 781 TGTGATGATGATGATTTTCTTGTTGTTGCATGTGATGGAATATGGGATTGTATGTCAAGC 840
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 953 TGTGATGATGATGACTTTCTTGTTGTTGCTTGCGATGGAATATGGGATTGTATGTCAAGC 1012
Query 841 CAGGAACTAGTGGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTTCCACGGTA 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1013 CAGGAACTAGTTGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTTCAACAGTA 1072
Query 901 TGCGAAAAAGTTGTTGATAAATGTTTGGCTCCAGACACTA-CGAGTGGAGAAGGTTGTGA 959
|| ||||| |||||||||| ||||||||||||||| || | ||| ||| |||||||||||
Sbjct 1073 TGTGAAAAGGTTGTTGATAGATGTTTGGCTCCAGATAC-AGCGACTGGTGAAGGTTGTGA 1131
Query 960 TAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCTAACCCATCCGAGACTGAACCAGA 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 TAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCTAACCCATCTGAGACTGAACCAGA 1191
Query 1020 AGAATCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCTTCAAGCTAG 1068
||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 AGATTCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCATCAAGCTAG 1240
> AT4G31860.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:15406439-15409000 REVERSE LENGTH=1540
Length=1540
Score = 970 bits (525), Expect = 0.0
Identities = 904/1086 (83%), Gaps = 30/1086 (3%)
Strand=Plus/Plus
Query 1 ATGGGTACATACCTAAGTTCTCCTAAAACTGATAAGTTATCAGAAGATGGTGAGAATGAT 60
||||||| ||| |||||| |||| ||||| || ||||| ||||||||||| || ||| ||
Sbjct 221 ATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGCGAAAATCAT 280
Query 61 AATCTCAGATATGGTTTATCGTCTATGCAAGGTTGGCGCGC-TACCATGGAAGATGCGCA 119
|| ||||||||||||||||| ||||||||||||||||| || | ||||||||||||| ||
Sbjct 281 AAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGT-CCATGGAAGATGCTCA 339
Query 120 TGCTGCAATTCTTGATCTGGATGATAAGACGTCGTTCTTCGGG-GTGTACGATGGGCATG 178
||||||||| |||||||| |||||||| || || ||||| ||| || || ||||| ||||
Sbjct 340 TGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTT-GGGTGTCTATGATGGTCATG 398
Query 179 GGGGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATG 238
| |||||||| ||| | ||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 399 GAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTTAGTGATG 458
Query 239 AAGCATATAAAGCTGGAGACATAGAAACAGCTCTTCGAAGAGCATTTTTTAGAATGGATG 298
| || ||| |||||||||| ||| || |||||| || ||||||||| ||||||||||
Sbjct 459 AGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGAATGGATG 518
Query 299 ACATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTCGGTGACAAGATGAATA 358
| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||
Sbjct 519 AGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAAATCAATA 578
Query 359 AATTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACA---CTAATA 415
| || || || ||||||||||| ||||||||||||||||||| || |||| ||||||
Sbjct 579 AGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGTGCTAATA 638
Query 416 AACAGCCCGATAATTGGCC-TCTTGAGGATGGTCCTCATTCTGATTTCACGGGACCTACT 474
||| | ||| |||| | | ||||||| ||||||||||||||||| | ||||||| |
Sbjct 639 AAC--CT-GATGCTTGGGCGT-TTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCTAAT 694
Query 475 TCGGGGTGCACAGCATGCGTAGCTCTTATTAAAGATAAGAAGCTCTTTGTTGCAAATGCC 534
|| ||| |||| |||||||||||| || ||| ||| ||| |||| ||||||||||||||
Sbjct 695 TCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAATGCA 754
Query 535 GGTGACTCACGTTGTGTGATATCAAGAAACAGTCAGGCTTACAATCTTTCTAAAGATCAC 594
||||||||||||||||||||||| ||||| | ||||||||| |||||||||| |||||||
Sbjct 755 GGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGATCAC 814
Query 595 AAGCCTGATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACGCT 654
|| || |||||||||| ||| |||||||||||||||||||||||||||||||| || ||
Sbjct 815 AAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACATGCA 874
Query 655 GGTAGAATCAATGGAAGCTTGAATCTGA-CAAGAGCCATTGGTGATATGGAATTCAAGCA 713
|| || ||||||||||||| ||||| | || |||| || ||||| ||||||||||||||
Sbjct 875 GGGCGAGTCAATGGAAGCTTAAATCT-ATCACGAGCTATCGGTGACATGGAATTCAAGCA 933
Query 714 GAACAAATTTTTACCATCTGAAAAGCAAATGGTTACTGCT-GATCCAGATATAAACACTA 772
||| || ||||| ||||||||||||||||| ||||| ||| | ||||||| | ||||||
Sbjct 934 GAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCTAG-TCCAGATGTTAACACTG 992
Query 773 TTGACCTATGTGATGATGATGATTTTCTTGTTGTTGCATGTGATGGAATATGGGATTGTA 832
|||| || ||||||||||||||||| |||||| |||| || |||||||| |||||||| |
Sbjct 993 TTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGCA 1052
Query 833 TGTCAAGCCAGGAACTAGTGGATTTTATCCATGAACAGTTAAAATCTGAAACAAAACTTT 892
|| ||||||| |||| || ||||| || |||||||| || || || || || ||||| |
Sbjct 1053 TGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTCT 1112
Query 893 CCACGGTATGCGAAAAAGTTGTTGATAAATGTTTGGCTCCAGACACTACGAG-TGGAGAA 951
| |||||| ||||||||| | |||| |||| |||||||| ||||| | || ||| |||
Sbjct 1113 CGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTC-AGGTGGTGAA 1171
Query 952 GGTTGTGATAATATGACCATCATCTTGGTTC-AGTTCAAGAAGCCTAAC-CCATCCGAGA 1009
|| |||||||| |||||||| || ||||||| | |||||||| |||| | ||||| ||||
Sbjct 1172 GGCTGTGATAACATGACCATGATATTGGTTCGA-TTCAAGAACCCTA-CTCCATCAGAGA 1229
Query 1010 CTGAAC-----C-AGAAG-AATCCAAACCAGAACCAAGCGAAGATGAGCCGAGCTCTTCA 1062
| |||| | ||||| || ||| | |||| || | | |||||||||||||| |||
Sbjct 1230 CCGAACTAAAACCAGAAGCAAGCCAGGC-AGAAGGAAACCACGATGAGCCGAGCTCATCA 1288
Query 1063 AGCTAG 1068
| ||||
Sbjct 1289 AACTAG 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5