BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344464
Length=3417
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of c... 3055 0.0
> AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609122-11617434 REVERSE
LENGTH=3968
Length=3968
Score = 3055 bits (1654), Expect = 0.0
Identities = 1861/1958 (95%), Gaps = 26/1958 (1%)
Strand=Plus/Plus
Query 1 ATGTATATCAAGCAGGTTATTATCGAAGGATTTAAGAGTTACAAAGAGCAAGTTGCTACT 60
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 157 ATGTTTATCAAGCAGGTTATAATCGAAGGATTTAAGAGTTACAAAGAGCAAGTTGCTACT 216
Query 61 GAGGATTTTAGTAACAAGGTCAATTGTGTTGTTGGGGCAAATGGGTCTGGGAAAAGCAAT 120
||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 217 GAGGAGTTTAGCAACAAAGTTAATTGTGTTGTTGGGGCAAATGGGTCTGGGAAAAGCAAT 276
Query 121 TTCTTCCATGCAATTCGTTTTGTATTGAGTGACATCTTCCAAAATCTGCGGAGTGAAGAT 180
||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 277 TTCTTCCATGCGATTCGTTTTGTATTGAGTGACATCTACCAAAATCTGCGCAGTGAAGAT 336
Query 181 AGGCATGCATTACTCCACGAAGGTGCTGGTCATCAAGTCGTGTCTGCGTTTGTGGAGATT 240
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 337 AGGCATGCATTACTCCATGAAGGTGCTGGTCATCAAGTCGTGTCCGCGTTCGTGGAGATT 396
Query 241 GTGTTTGATAATTCTGACAACCGGTTCCCGGTTGATAAGGAAGAAATACGCTTGCGCCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 397 GTGTTTGATAATTCTGACAACCGGTTCCCGGTTGATAAGGAAGAAATACGCTTGCGCAGA 456
Query 301 ACGGTTGGCCTGAAGAAGGATGATTATTTCTTGGATGGGAAACACATTACAAAAGGTGAA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ACAGTTGGCCTGAAGAAGGATGATTATTTCTTGGATGGGAAACACATTACAAAAGGTGAA 516
Query 361 GTTATGAATTTATTGGAGAGTGCTGGATTTTCTCGTGCTAATCCTTACTATGTTGTTCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GTTATGAATTTATTGGAGAGTGCTGGATTTTCTCGTGCTAATCCTTACTATGTTGTTCAA 576
Query 421 CAAGGAAAGATAGCCTCGTTAACACTGATGAAAGACATAGAACGGCTGGATCTGCTAAAA 480
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 577 CAAGGAAAGATAGCCTCGTTAACACTAATGAAAGACATAGAACGGTTGGATCTGCTAAAA 636
Query 481 GAGATAGGTGGTACTCGTGTTTATGAGGAGAGGCGTCGTGAGAGTTTAAAAATTATGCAG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 637 GAGATAGGTGGTACTCGTGTTTATGAGGAGAGGCGTCGTGAGAGTTTAAGAATTAT---- 692
Query 541 GAAACAGGCAAGTTATCAGTGTGCAGAAATAAACGGAAGCAGATCATCGAAGTTGTCCAC 600
| |||| || | || | |||||||||||||||||||||||||||||||||||
Sbjct 693 G---CAGG-AA---A-CA----G--GAAATAAACGGAAGCAGATCATCGAAGTTGTCCAC 738
Query 601 TACTTGGATGAAAGACTAAGAGAACTGGACGAAGAGAAAGAAGAACTCAGAAAATATCAA 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 739 TACTTGGATGAAAGACTAAGAGAATTGGACGAAGAGAAAGAAGAACTCAGAAAATATCAA 798
Query 661 CAACTTGACAAGCAGAGAAAATCACTGGAATACACCATTTACGAAAAAGAGCTTCACGAT 720
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 799 CAACTTGACAAACAGAGAAAATCACTGGAATACACCATTTACGACAAAGAGCTTCACGAT 858
Query 721 GCTCGGGAGAAACTGGAACAGGTAGAAGTTGCAAGAACTAAGGCATCTGAAGAGTCTACA 780
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 859 GCTCGGGAGAAACTGGAACAGGTAGAAGTTGCACGAACTAAGGCATCTGAAGAGTCCACA 918
Query 781 AGAATGTATGATAGAGTTGAGAAGGCCCAGGACGACTCCAAGTCCTTAGATGAGTCCCTG 840
| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 919 AAAATGTATGATAGAGTGGAGAAGGCCCAGGACGACTCCAAGTCTTTAGATGAATCCCTG 978
Query 841 AAAGAGCTGACAAAAGAGCTTCAGATGTTATACAAGGAGAAAGAAACTGTTGAAGTTCAA 900
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 979 AAAGAACTGACAAAGGAGCTTCAGACGTTATACAAGGAGAAAGAAACTGTTGAAGCTCAA 1038
Query 901 CAAACTGAAGC-TATAGAGAAGAAGACAAAGCTGGAGCTTGATGTGAAGGACTTTCAGGA 959
|||||| |||| | || |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1039 CAAACTAAAGCGT-TAAAGAAAAAGACAAAGCTGGAGCTTGATGTGAAAGACTTTCAGGA 1097
Query 960 TCGAATTACTGGAAATTTTCAGTCTAAGAATGATGCACTTGAGCAACTTAATACGGTGGA 1019
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1098 TCGAATTACTGGAAATATTCAGTCTAAGAATGATGCACTTGAGCAACTTAATACAGTGGA 1157
Query 1020 AAGAGAAATGAAGGATTCTGAGAGGGAACTGGAGGCAATTAATCCTTTGTATGCAAGTTA 1079
|||||||||| |||||||| ||||||||||||||| ||||| |||||||||| |||| |
Sbjct 1158 AAGAGAAATGCAGGATTCTTTGAGGGAACTGGAGGCGATTAAGCCTTTGTATGAAAGTCA 1217
Query 1080 TCTTGACAAGGAGAAGCAGGCATCAAAAAGAATCAATGAGCTGG-AAAAACAACTTAGCA 1138
|||||||||| || ||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 1218 AGTTGACAAGGAAAACCAGACATCAAAAAGAATCAATGAGCTGGAAAAAAC-ACTTAGCA 1276
Query 1139 TTCTATATCAGAAACAGGGACGTGCAACTCAATTTTCAAGTAAGGCTGCCCGAGATAAAT 1198
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1277 TTCTTTATCAGAAACAGGGACGTGCAACTCAATTTTCAAATAAGGCTGCCCGAGATAAAT 1336
Query 1199 GGCTCAGGAAAGAGATTGAGGATCTTAAGCGTGTTCTAGACTCAAATA-TGGTTCAAGAG 1257
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 1337 GGCTCAGGAAAGAGATTGAAGATCTTAAGCGTGTTCTAGACTCAAATACT-GTTCAAGAG 1395
Query 1258 CACAAACTTCAGGATGAAATTCTTCGCCTCAAAACTGACTTGATAGAGCGTGATGAGCAC 1317
|| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1396 CAAAAACTTCAGGATGAAATTCTTCGCCTCAATACTGACTTGACAGAGCGTGATGAGCAC 1455
Query 1318 ATCAAGAAACATGAAG-TGAAAATTGGTGAACTGGAATCTCATATTTCCAAGTCCCATGA 1376
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1456 ATCAAGAAACATGAAGTTG-AAATTGGTGAACTGGAATCTCGTATTTCCAAGTCCCATGA 1514
Query 1377 ACTATTCAATACTaaaaagagagagagagatgaagaacaaagaaaaagaaaggaaaaatg 1436
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1515 ACTATTCAATACTAAAAAGAGGGAGAGAGATGAAGAACAAAGAAAAAGAAAGGAAAAATG 1574
Query 1437 gggagaagaaagTCAACTTTCTTCTGAGATTGACAAGTTGAAAACGGAACTTGAACGGGC 1496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1575 GGGAGAAGAAAGTCAACTTTCTTCTGAGATTGACAAGTTGAAAACAGAACTTGAACGGGC 1634
Query 1497 AAAGAAAAACCTTGATCATGCAACTCCAGGGGATGTAAGGAGAGGGCTGAACTCTATTCG 1556
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1635 AAAGAAAAACCTTGATCATGCAACTCCAGGAGATGTAAGGAGAGGGCTGAACTCTATTCG 1694
Query 1557 ACGGATTTGTTCAGAGTATAGGATCAATGGAGTTTTTGGTCCACTTGTTGAGTTGGTTGA 1616
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1695 ACGGATTTGTGCAGACTATAGAATCAATGGAGTTTTTGGTCCACTTGTTGAGTTGGTTGA 1754
Query 1617 TTGCGATGAAAAGTTTTTCACTGCAGTTGAAGTCACTGCTGGAAACAGCCTATTTAACGT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1755 TTGCGATGAAAAGTTTTTCACTGCAGTTGAAGTCACTGCTGGAAACAGCCTGTTTAACGT 1814
Query 1677 GGTAGTTGAGAATGATGATATTTCAACCAAGATAATTAGACACCTGAATTCTCTCAAGGG 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 GGTAGTTGAGAATGATGATATTTCAACCAAGATAATTAGACACCTGAATTCTCTCAAGGG 1874
Query 1737 TGGACGAGTGACCTTCCTACCTCTGAATCGGATAAAGGCGCCTCGCGTCAACTATCCAAA 1796
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TGGACGTGTGACCTTCCTACCTCTGAATCGGATAAAGGCGCCTCGCGTCAACTATCCAAA 1934
Query 1797 AGATTCTGATGCAATACCACTGTTGAGAAAGTTAAAGTTCGACTCTAAGTTTGAACCTGC 1856
|||||||||||||||||| ||| | | ||||||||||||||| || ||||||||||| ||
Sbjct 1935 AGATTCTGATGCAATACCTCTGCTCAAAAAGTTAAAGTTCGATTCAAAGTTTGAACCAGC 1994
Query 1857 ATTGGGTCAGGTTTTTGGTAGAACAGTAGTATGTCGTGATCTGAATGTGGCAACAAGAGT 1916
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1995 ATTGGGTCAGGTTTTTGGTAGAACAGTAGTATGCCGTGATCTGAATGTGGCAACAAGAGT 2054
Query 1917 TGCTAAGAATGATGACCTCGATTGTATAACTATGGAAG 1954
||||||||||||||||||||||||||||||||||||||
Sbjct 2055 TGCTAAGAATGATGACCTCGATTGTATAACTATGGAAG 2092
Score = 977 bits (529), Expect = 0.0
Identities = 574/596 (96%), Gaps = 2/596 (0%)
Strand=Plus/Plus
Query 1953 AGATCAGCAGATTACACAGCTTGTTACTGAGCAGCAGAGACTTGAAGCAGACTGGACGCT 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 AGATCAGCAGATTACACAGCTTGTTACTGAGCAGCAGAGACTTGAAGCAGACTGGACGCT 2306
Query 2013 CTGCAAATTACAGGTGGAGCAACTTAAGCAAGAGATAGCTAACGCTAATAAGCAGAAACA 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2307 CTGCAAATTACAGGTGGAGCAACTTAAGCAAGAGATAGCTAACGCTAATAAGCAGAAACA 2366
Query 2073 TGCTATACATAAAGCCATTGAAAATAAGAAAAAATCACTAGGTGATATTGGAACACGAAT 2132
|||||||||||||||||||||| ||||| | |||| ||||||||||||| ||||||||||
Sbjct 2367 TGCTATACATAAAGCCATTGAATATAAGGAGAAATTACTAGGTGATATTAGAACACGAAT 2426
Query 2133 TGACCAGGTTAGATCCAGCATGTCTATGAAAGAAGCTGAAATGGGAACAGAACTTGTGGA 2192
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2427 TGACCAGGTTAGATCCAGCATGTCTATGAAAGAAGCTGAAATGGGAACGGAACTTGTGGA 2486
Query 2193 TCACCTAACTCCAGAAGAGAGGGTGCAATTGTCGCAATTAAACCCCCAAATCAAGGACCT 2252
|||||||||||||||||| |||| |||||||||| |||||||||| |||||||||| ||
Sbjct 2487 TCACCTAACTCCAGAAGAAAGGGAGCAATTGTCGAAATTAAACCCAGAAATCAAGGATCT 2546
Query 2253 TAAGGaaaaaaaaTTTGCATACCAGGCAGATCGCATTGAGAGGGAGACAAGAAAAGCAGA 2312
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2547 TAAGGAAAAAAAATTTGCATACCAGGCCGATCGCATTGAGAGGGAGACAAGAAAAGCAGA 2606
Query 2313 GTTGGAGGCTAATATTGCTACCAACTTAAAGAGGAGAATAACTGAGTTAAAGGCTACTAT 2372
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2607 GTTGGAGGCTAATATTGCTACCAACTTAAAGAGGAGAATAACTGAGTTACAGGCTACTAT 2666
Query 2373 AGCTTCCATCGACGATGATAGTTTGCCTAGTTCAGCTGGCATGAAAGAACAAGAACTTGA 2432
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2667 AGCTTCCATCGACGATGATAGTTTGCCTAGTTCAGCTGGCACAAAAGAACAGGAACTTGA 2726
Query 2433 TGATGCAAAATTGTTGGTCAATGAGG-TCGCAAAAGAGCTCAAAAGTGTCTGTGACAGCA 2491
|||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2727 TGATGCAAAATTGTCGGTCAATGAGGCT-GCAAAAGAGCTCAAAAGTGTCTGTGACAGCA 2785
Query 2492 TTGATGAGAAGACGAAGCAAGTCAAGAAAATTAAAGATGAGAAAGCAAAGTTAAAG 2547
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2786 TTGATGAGAAGACAAAGCAAATCAAGAAAATTAAAGATGAGAAAGCAAAGTTAAAG 2841
Score = 778 bits (421), Expect = 0.0
Identities = 525/570 (92%), Gaps = 27/570 (5%)
Strand=Plus/Plus
Query 2576 AGACATTGGAAGATGATTGCAAGGGGACACTACAGGATTTAGATAAAAAGTTGGAGGAAC 2635
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 2840 AGACATTGGAAGATGATTGTAAAGGGACACTACAAGATTTAGATAAAAAGTTGGAGGAAC 2899
Query 2636 TATTTAGCCTACGCAACACACTTCTTGCTAAGCAAGATGAGTATACTAAGAAGATTAGGG 2695
| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2900 TGTTTAGCCTTCGCAACACGCTCCTTGCTAAGCAAGATGAGTATACTAAGAAGATTAGGG 2959
Query 2696 GATTGGGTCCATTGTCATCTGATACTTTTGACACGTATAAACGGAAAAATATCAAGGAGC 2755
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2960 GATTGGGTCCATTGTCATCTGACGCTTTTGACACGTATAAACGAAAAAATATCAAGGAGC 3019
Query 2756 TGCAGAAGATGCTACACCGGTGCAGTGAACAGCTGCAACAATTTAGCCATGTAAACAAGA 2815
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 3020 TGCAGAAGATGCTACACCGGTGCAGTGAACAGCTGCAACAATTCAGCCATGTCAACAAGA 3079
Query 2816 AAGCGCTGGATCAATATGTGAATTTCACAGAACAGCGAGAAGAACTTCAAAATCGGCAAG 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3080 AAGCGCTGGATCAATATGTGAATTTCACAGAACAGCGAGAAGAACTTCAAAATCGGCAAG 3139
Query 2876 CAGAGCTTGATGCAGGAGATGAGAAAATTAAAGAGCTGATAACAGTTCTGGATCAGCGGA 2935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3140 CAGAGCTTGATGCAGGAGATGAGAAAATTAAAGAGCTGATAACAGTTCTGGATCAGCGGA 3199
Query 2936 AAGATGAATCTATAGAACGTACTTTCAAAGGGGTTGCACATCACTTCAAGGATGTATTCT 2995
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3200 AAGACGAATCTATAGAACGTACTTTCAAAGGGGTTGCACATCACTTCAGGGATGTATTCT 3259
Query 2996 CTGAGCTTGTGCAAGGTGGATATGGTAACCTT--------GA----------TCTtgat- 3036
||||||||||||||| |||||||||||||||| || |||||||
Sbjct 3260 CTGAGCTTGTGCAAGATGGATATGGTAACCTTATCATTATGAAGAAAAAGGATCTTGATA 3319
Query 3037 --gatga--a-gatgatgatgatgatgatgGAGGTC---AAGCTGTTGCAGAGGGAAGAA 3088
||||| | ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 3320 ATGATGATGAAGATGATGATGATGATGATGGAGGTCGTGAAGCTGTTACAGAGGGAAGGG 3379
Query 3089 TTGAGAAATACATTGGTGTAAAAGTGAAGG 3118
||||||||||||||||||||||||||||||
Sbjct 3380 TTGAGAAATACATTGGTGTAAAAGTGAAGG 3409
Score = 429 bits (232), Expect = 8e-119
Identities = 257/269 (96%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 3150 GCGATGTGATACC-GCACCATTCTATCTTTTTGATGAGATTGATGCGGCACTTGATCCAC 3208
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3504 GCGATGTGAT-CCTGCACCATTCTATCTTTTTGATGAGATTGATGCAGCACTTGATCCAC 3562
Query 3209 AGTACCGAACTGCTGTGGGAAACTTGATTCGTCGTCTAGCTGATGATTATGGCACGCAGT 3268
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3563 AGTACCGAACCGCTGTGGGAAACTTGATTCGTCGTCTTGCTGATGATTATGGCACGCAGT 3622
Query 3269 TCATAACCACAACATTCCGTCCTGAGCTAGTGAGAGTTGCGGATAAGATATATGGAGTAT 3328
|||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 3623 TCATCACCACAACTTTCCGTCCCGAGCTTGTGAGAGTCGCGGATAAGATATATGGAGTAT 3682
Query 3329 TTCATAAGAACAGAGTGAGTATTGTGAATGTTATCACAAAGGATCAGGCGTTGGACTTCA 3388
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3683 TTCATAAGAACAGAGTGAGTATTGTGAATGTTATCTCAAAGGATCAGGCGTTGGACTTCA 3742
Query 3389 TCGAGAAAGATCAGTCCCACGATACCTGA 3417
| |||||||||||||||||||||||||||
Sbjct 3743 TTGAGAAAGATCAGTCCCACGATACCTGA 3771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170065936770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5