BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344684
Length=2457
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29080.1 | Symbols: ftsh3 | FTSH protease 3 | chr2:12489627-... 3784 0.0
AT1G07510.1 | Symbols: ftsh10 | FTSH protease 10 | chr1:2305378... 1899 0.0
> AT2G29080.1 | Symbols: ftsh3 | FTSH protease 3 | chr2:12489627-12493285
REVERSE LENGTH=3000
Length=3000
Score = 3784 bits (2049), Expect = 0.0
Identities = 2327/2457 (95%), Gaps = 35/2457 (1%)
Strand=Plus/Plus
Query 1 ATGATCTTCTTCTCTAAGCTTAGTCGCTCCATTTCTCGTTCAAGGGGGTTTTTGTACGGT 60
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 293 ATGATCTTCTTCTCTAAGCTTAATCGCTCCATTTCTCGTTCAAAGGGATTTTTGTACGGT 352
Query 61 GGTGGTGTTAGATCGGCGGTGTTAAACGAGGCAAGGCTACTTGCTTCGCCAGGTCTTGAG 120
||||||||||||| | | | | ||||||||||||| ||||||| || ||||||
Sbjct 353 GGTGGTGTTAGAT---C-G-G-----C--GGCAAGGCTACTTACTTCGCCGGGACTTGAG 400
Query 121 GCGGCGTCTGTGAATCAAGTGGAAGGTGGATTAGGGTTTATAAGAAGACACTTTGCTTCT 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GCGGCGTCTGTGAATGAAGTGGAAGGTGGATTAGGGTTTATAAGAAGACACTTTGCTTCT 460
Query 181 TTAGCTTCACGGAAGGGTTTAGTCAATAATGATTTGATTGGTGTTTTTGCTAATCCAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 461 TTAGCTTCACGGAAGGGTTTAGTCAATAATGATTTGATTGGTGTTTTTGCTAATCC-AAG 519
Query 241 A-TTCGTCGATTCTTCTCTGATGAAGCTCCTAAGAAGAAGAATTATGAGAACTATTTTCC 299
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ACTTCGTAGATTCTTCTCTGATGAAGCTCCTAAGAAGAAGAATTATGAGAACTATTTTCC 579
Query 300 TAAAGATACAAAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGAGGGTTCAGA 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TAAAGAT---AAGCAAGAACCCAAGAGTGATCAGAAATCAGAGCATAAAGAGGGTTCAGA 636
Query 360 GAAGAATGAAAATGAGAACGTGGGAGATATGTTCATGAATCGATTCCAAAATTTGCTGAT 419
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 637 AAAGAATGAAAATGAGAATGTGGGAGATATGTTCATGAACCGATTCCAAAATTTGCTAAT 696
Query 420 TCCTCTATTAGCTCTTGCTGTGTTCTTTTCTTCTTTCTCGTTTGGCTCTGGGGACCAACA 479
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 697 TCCTCTACTAGCTCTTGCTGTATTCTTTTCTACTTTCTCGTTTGGCTCTGGGG---AACA 753
Query 480 ACAGGCAAATGTGGTTCTACTTATTAGTTTCCAGGAGTTCAAAAACAAGCTTCTCGAGCC 539
||| | | | | || |||||||||||||||||||||||||| ||||||||
Sbjct 754 ACA---ACA----G----A--TA--AGTTTCCAGGAGTTCAAAAACAAGCTACTCGAGCC 798
Query 540 AGGTCTAGTTGACCACATAGATGTTTTAAACAAATCAGTAGCAAAAGTCTATGTGAGGAG 599
||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 799 TGGTTTAGTTGACCACATAGATGTTTCAAACAAATCAGTAGCAAAAGTCTACGTGAGGAG 858
Query 600 CTCACCGAAAGACCAACAAACAACTGACGTTGTCCATGGCAATGGTAATGGTATACCTGC 659
| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 859 CACACCGAAAGACCAACAAACAACTGACGTTGTCCATGGTAATGGTAACGGTATTCCTGC 918
Query 660 TAAAAGAACAGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTTTGA 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TAAAAGAACTGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTTTGA 978
Query 720 GGAGAAACTCGAAGAAGCTCAAGAAGCGCTAGGTGTTGATCGTCATGAATATGTTCCTGT 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 979 GGAGAAACTCGAAGAAGCTCAAGAAGCGTTAGGTGTTGATCGTCATGAATATGTTCCTGT 1038
Query 780 CACATATGTCTCTGAAATGGTCTGGTATCAAGAGTTCATGAGGTTTGCACCGACTTTATT 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1039 CACATACGTCTCTGAAATGGTCTGGTATCAAGAGTTCATGAGGTTTGCACCGACTTTGTT 1098
Query 840 GCTCTTGGGTACTCTTATCTATGGGGCGAGACGGATGCAAGGTGGATTGGGTGTAGGAGG 899
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1099 GCTCTTGGGTACTCTGATCTATGGTGCGAGACGGATGCAAGGTGGATTGGGTGTAGGAGG 1158
Query 900 AACCGGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGCCACAATAATAAGAGC 959
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1159 AACTGGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGCTACAATAACGAGAGC 1218
Query 960 GGATAAACATTCCAAGAATAAGATTTATTTTAAGGATGTTGCTGGATGTGATGAGGCTAA 1019
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1219 TGATAAACATTCCAAGAATAAGATTTATTTCAAGGATGTTGCTGGATGTGACGAGGCTAA 1278
Query 1020 ACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGAAGATTTGGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 ACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGAAGATTTGGG 1338
Query 1080 TGCTAAAATTCCGAAAGGGGCACTTTTAGTCGGTCCGCCTGGAACCGGAAAGACCCTTTT 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TGCTAAAATTCCGAAAGGTGCACTTTTAGTCGGTCCGCCTGGAACCGGAAAGACCCTTTT 1398
Query 1140 AGCAAAAGCCACAGCGGGAGAATCGGGTGTGCCATTTCTGTCTATTTCTGGCTCAGATTT 1199
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1399 AGCAAAAGCCACAGCAGGAGAATCTGGTGTGCCATTTCTGTCTATTTCTGGCTCAGATTT 1458
Query 1200 CATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCAAGAGGCAAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1459 CATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCAAGAGGCGAG 1518
Query 1260 ACAAGCTGCACCGAGCATTATATTTATAGATGAGATTGATGCGATTGGTCGGGCAAGAGG 1319
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1519 ACAAGCTGCACCGAGCATTATATTTATCGATGAGATTGATGCTATTGGTCGGGCAAGAGG 1578
Query 1320 TCGTGGAGGTTTAGGCGGTAACGATGAGCGTGAAAGCACTCTGAATCAGTTGCTAGTTGA 1379
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1579 TCGTGGAGGTTTAGGCGGAAATGATGAGCGTGAAAGCACTCTGAATCAGTTGCTAGTTGA 1638
Query 1380 AATGGACGGTTTTGGTACAACCGCTGGAGTTGTGGTTCTTGCTGGGACCAACAGACCGGA 1439
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1639 AATGGATGGTTTTGGTACAACCGCTGGTGTTGTGGTTCTTGCTGGAACCAACAGACCGGA 1698
Query 1440 TATTTTGGATAAAGCTTTGTTAAGGCCTGGCCGTTTTGATCGCCAGATAACCATTGATAA 1499
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1699 TATTTTGGATAAAGCTTTGTTAAGGCCTGGACGTTTTGATCGCCAGATAACTATTGATAA 1758
Query 1500 ACCTGATATTAAAGGGCGTGATCAGATTTTCCAGATTTACTTGAAGAAGATCAAACTTGA 1559
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1759 ACCTGATATCAAAGGGCGTGATCAGATTTTCAAGATTTACTTGAAGAAGATCAAACTTGA 1818
Query 1560 TCATGAGCCATCATATTACTCTCAAAGGCTTGCGGCTCTCACTCCCGGATTTGCTGGAGC 1619
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1819 TCATGAGCCATCATATTACTCTCAAAGGCTTGCTGCTCTCACTCCCGGGTTTGCAGGAGC 1878
Query 1620 TGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGACACGAAGGAGCAAC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGACACGAAGGAGCAAC 1938
Query 1680 GGTTACAATGGCACACTTTGAATCTGCAATTGATCGTGTTATTGGTGGTCTTGAGAAGAA 1739
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1939 GGTTACTATGGCACACTTTGAATCTGCGATTGATCGTGTTATTGGTGGTCTTGAGAAGAA 1998
Query 1740 AAACCGGGTGATAAGCAAGTTGGAGCGACGTACGGTTGCATATCATGAATCTGGGCATGC 1799
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1999 AAACCGGGTGATAAGCAAGTTGGAGCGACGTACAGTTGCATATCATGAATCTGGTCACGC 2058
Query 1800 AGTTGTAGGATGGTTCCTCGAACATGCAGAGCCGTTGCTGAAAGTGACTATTGTACCACG 1859
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2059 AGTTGTAGGGTGGTTCCTTGAACATGCAGAGCCGTTACTGAAAGTGACTATTGTACCACG 2118
Query 1860 TGGCACAGCGGCTCTCGGATTTGCACAATATGTTCCAAACGAAAACCTTCTCATGACCAA 1919
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2119 TGGCACAGCGGCTCTCGGATTTGCACAATACGTTCCAAACGAAAACCTTCTCATGACCAA 2178
Query 1920 AGAGCAACTCTTTGACATGACTTGCATGACCCTCGGTGGCCGTGCAGCTGAGCAGGTATT 1979
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2179 AGAGCAACTCTTTGACATGACTTGCATGACTCTCGGAGGCCGTGCAGCTGAGCAGGTATT 2238
Query 1980 GATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACAAAGATGACGTA 2039
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2239 GATAGGTAAAATCTCAACGGGTGCGCAGAACGATCTAGAGAAGGTGACGAAGATGACTTA 2298
Query 2040 TGCGCAAGTAGCTGTATACGGTTTCAGTGACAAGGTTGGCCTGCTCTCGTTTCCCCCAAG 2099
|||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||
Sbjct 2299 CGCGCAAGTAGCTGTGTATGGTTTCAGTGACAAGGTTGGGCTACTCTCGTTTCCACCAAG 2358
Query 2100 GGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAAACAGGCGCTATCATAGACGA 2159
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2359 GGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAAACCGGTGCTATCATAGACGA 2418
Query 2160 AGAAGTTAGGGAATGGGTGGCCAAAGCTTATGAGCGGACCGTAGAGCTGGTTGAGGAACA 2219
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2419 AGAAGTTAGGGACTGGGTGGCCAAAGCTTATGAGCGGACCGTAGAGCTGGTTGAGGAACA 2478
Query 2220 CAAAGAGAAAGTGGCTCAGATCGCCGAGCTTTTACTAGAGAAAGAGGTGTTGCATCAGGA 2279
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2479 CAAAGTGAAAGTGGCTGAGATCGCCGAGCTTTTACTAGAGAAAGAGGTGTTGCATCAGGA 2538
Query 2280 TGATCTCTTAAAAGTTTTAGGTGAACGTCCATTTAAGTCCGCTGAGGTGACTAATTATGA 2339
||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 2539 TGATCTCTTAAAAATTTTAGGTGAACGTCCGTTTAAGTCAGCTGAGGTCACTAATTATGA 2598
Query 2340 CCGGTTCAAGTCTGGGTTTGAGGAGACTGAGAAGGACTCAGCCCCCACGCCGACAGTGGA 2399
||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||
Sbjct 2599 CCGGTTCAAGTCTGGGTTTGAAGAGACTGAGAAGGACTCAGCCGCCACCCCTACAGTGGA 2658
Query 2400 GCCTGTGGTAGATGAAGGAGCTCCTCCTCCGCTTGAACCACAGGTTATTCCGACGTA 2456
||||||||| ||||| |||||||| || ||| ||||||| |||||| ||||||||||
Sbjct 2659 GCCTGTGGTGGATGATGGAGCTCCCCCGCCGTTTGAACCCCAGGTTGTTCCGACGTA 2715
> AT1G07510.1 | Symbols: ftsh10 | FTSH protease 10 | chr1:2305378-2309544
FORWARD LENGTH=2917
Length=2917
Score = 1899 bits (1028), Expect = 0.0
Identities = 1957/2395 (82%), Gaps = 106/2395 (4%)
Strand=Plus/Plus
Query 24 TCGCTCCAT-TTCTCGTTC-AAGGGGGTTTTTGTACGGTGGTGGTGTTAGATCGGCGGT- 80
|||||| || || ||||| || ||| ||| ||||||| |||||||| |||||||||||
Sbjct 340 TCGCTCGATCCTCACGTTCTAA-GGGATTTGTGTACGGCGGTGGTGTGAGATCGGCGGTA 398
Query 81 GTTAAACGAGGCAAGGCTACTTGCTTCGCCAG-GTCTTGAGGCGGCGTCTGTGAATCAAG 139
|||| | ||| ||| ||| || || ||| ||| |||||||| | || ||||| |
Sbjct 399 TTTAACCAAGG-GAGGTTACGAGCGCCG-CAGAATCTCGAGGCGGC--C-GTCAATCAGG 453
Query 140 TGGAAGGTGGATTAGGGTTTATAAGAAGACACTTTGCTTCTTTAGCTTCACGGAAGGGTT 199
|||| ||||||||||||||| | || | |||||||||||||| ||| | || |||||
Sbjct 454 TGGATGGTGGATTAGGGTTTTTGAGGCGGCACTTTGCTTCTTTTGCTGCTCGAAAGGGAC 513
Query 200 TAGTCAA--TAATGATTTGATTGGTGTTTTTGCTAATCCAAAGATT-CGTCGATTCTTCT 256
||| || |||||| | ||| ||| ||||| || ||||| ||||| ||||| |
Sbjct 514 TAG--AAGCCGGTGATTTAAGCCGTGCTTTCGCTAA-CCCTAGATTGCGTCGGTTCTTTT 570
Query 257 CTGA-TGAAGCTCCTAAGAAGAAGAATTATGAGAACTATTTTCCTAAAGATACAAAGCAA 315
|| | | || | || ||||||||||||||||||||||| | ||| ||||| | ||| ||
Sbjct 571 CT-AGTCAAACCCCAAAGAAGAAGAATTATGAGAACTACTATCCAAAAGACAGTAAGAAA 629
Query 316 GAACCCAAGAGTGATCAGAAATCAG-AGCATAAAGAGGGTTCAGAGAAGAATGAAAATGA 374
| |||||||| ||| |||||||| | | | | ||| |||||| |||| |||||||| ||
Sbjct 630 GCACCCAAGAATGAGCAGAAATCTGAATC-CAGAGATGGTTCAAAGAAAAATGAAAACGA 688
Query 375 GAACG-TGGGAGATATGTTCAT-GAATCG-AT-TCCAAAATTTGCTGATTCCTC-TATTA 429
|| | |||| || |||| | ||| | || | |||||| || | ||||||| || |
Sbjct 689 AAATGCTGGG-GACGCGTTC-TCAAAT-GAATAT-CAAAATATGTTAATTCCTCTTA-TG 743
Query 430 GCTC-TTGCTGTGTTCTTTTCTTCTTTCTCGTTTGGCTCTGGGGACCAACAACAGGCAAA 488
|| | ||||| | || ||||| ||||||| | || ||| || | |||| || ||
Sbjct 744 GC-CATTGCTTTAATCCTTTCTACTTTCTC---T--CT-TGGTTCCCGAGAACA-GC-AA 794
Query 489 TGTGGTTCTACTTATTAGTTTCCAGGAGTTCAAAAACAAGCTTCTCGAGCCAGGTCTAGT 548
| | ||||||||||||||||||||||||||||| |||||| | ||| ||||
Sbjct 795 -------C-A--GATTAGTTTCCAGGAGTTCAAAAACAAGCTCCTCGAGGCTGGTTTAGT 844
Query 549 TGACCACATAGATGTTTTAAACAAATCAGTAGCAAAAGTCTATGTGAGGAGCTCACCGAA 608
|| ||||||||||||| || ||| ||| |||||||||||||||||||| ||||| ||
Sbjct 845 GGATCACATAGATGTTTCCAATAAAGAAGTCGCAAAAGTCTATGTGAGGAGTTCACC-AA 903
Query 609 AGA-CC-AACAAAC--AACTGACGTTGTCCATGG-CAATGGTAATGGTA-TACCTGCTAA 662
| | || ||| ||| || || ||||| || || | ||||||||| | | |||||| |
Sbjct 904 AAAGCCAAAC-AACGGAA--GAAGTTGTTCAAGGTC-CTGGTAATGG-AGTTCCTGCT-A 957
Query 663 AAGAAC-AGGTGGTCAGTATAAGTACTACTTCAATATCGGTAGTGTTGATTCTTTTGAGG 721
||| || ||||||||||||||||||||||| ||||| ||||||||||| || |||||||
Sbjct 958 AAGGACGTGGTGGTCAGTATAAGTACTACTTTAATATTGGTAGTGTTGAATCATTTGAGG 1017
Query 722 AGAAACTCGAAGAAGCTCAAGAAGCGCTAGGTGTTGA-TCGTCATGAATATGTTCCTGTC 780
||||||| ||||| || |||||||| |||| ||| | || |||||| | ||||||||||
Sbjct 1018 AGAAACTAGAAGAGGCCCAAGAAGCTATAGGCGTTAATTC-TCATGACTTTGTTCCTGTC 1076
Query 781 ACATATGTCTCTGAAA-TGGTCTGGTATCAAGAGTTCA-TGAGGTTTGCACCGACTTTA- 837
|| || ||| ||||| | ||||||| || || | | |||| |||||||||||||||
Sbjct 1077 ACCTACGTCAGTGAAACT-ATCTGGTACCAGGAACT-ATTGAGATTTGCACCGACTTTAC 1134
Query 838 TTGCTCTTGGGTACTCTTATCTATGGGGCGAGACGGATGCAAGGTGGA-T-TG-GGTGTA 894
|| ||| ||| ||| || || | |||||| |||||||||||||||||| | | ||| ||
Sbjct 1135 TT-CTCGTGGCTACGCTAATTTTTGGGGCAAGACGGATGCAAGGTGGACTGGGAGGTTTA 1193
Query 895 GGAGGAACC-GGCGGTAAGAATGGTCGTGGAATTTTCAATATAGGCAAAGC-CACAATAA 952
|| || ||| || || ||| ||| |||||||||||||||||||| ||||| || |||||
Sbjct 1194 GGCGG-ACCTGGTGGGAAGGCTGGCCGTGGAATTTTCAATATAGGGAAAGCTCA-AATAA 1251
Query 953 TAAGAGCGGATAAACATTCCAAGAATAAGATTTATTTTAAGGATGTTGCTGGATGTGATG 1012
||||| |||||| | |||||||||||||| |||||||| |||||||| ||||| || |
Sbjct 1252 CGAGAGCAGATAAAAACTCCAAGAATAAGATATATTTTAAAGATGTTGCGGGATGCGAGG 1311
Query 1013 AGGCTAAACAAGAAATTATGGAGTTTGTACATTTCCTTAAGAACCCAAAGAAGTATGAAG 1072
|||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||
Sbjct 1312 AGGCTAAACAAGAAATTATGGAATTTGTGCATTTCCTTCAGAACCCAAAGAAATATGAAG 1371
Query 1073 ATTTGGGTGCTAAAATTCCGAAAGGGGCACTTTTAGTCGGTCCGCCTGGAACCGGAAAGA 1132
||||||| |||||||| || ||||| || |||||||| || || || || || |||||||
Sbjct 1372 ATTTGGGAGCTAAAATCCCAAAAGGTGCGCTTTTAGTTGGCCCACCCGGGACTGGAAAGA 1431
Query 1133 CCCTTTTAGCAAAAGCCACAGCGGGAGAATCGGGTGTGCCATTTCTGTCTATTTCTGGCT 1192
||||| |||||||||| || || |||||||| | ||| || ||||| || || ||||| |
Sbjct 1432 CCCTTCTAGCAAAAGCTACTGCAGGAGAATCAGCTGTACCGTTTCTCTCAATATCTGGTT 1491
Query 1193 CAGATTTCATGGAGATGTTTGTTGGTGTTGGGCCTTCGAGGGTGAGACATTTGTTCCAAG 1252
||||||||||||||||||||||||||||||| ||||| || |||||| | ||||| ||||
Sbjct 1492 CAGATTTCATGGAGATGTTTGTTGGTGTTGGACCTTCCAGAGTGAGAAACTTGTTTCAAG 1551
Query 1253 AGGCAAGACAAG-CTGCACCGAGCATTATATTTATAGATGAGATTGATGCGATTGGTCGG 1311
|||| |||| || |||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1552 AGGCTAGAC-AGTGTGCACCTAGCATAATATTTATTGATGAGATCGATGCGATTGGCCGT 1610
Query 1312 GCAAGAGGTCGTGGAGG-TT-T-AGGCGGTAACGATGAGCGTGAAAGCACTCTGAATCAG 1368
|| || || |||||||| || | || || || ||||||||||||||||| || |||||
Sbjct 1611 GCGAGGGGACGTGGAGGTTTCTCTGGTGGAAATGATGAGCGTGAAAGCACACTTAATCAA 1670
Query 1369 TTGCTAGTTGAAATGGACGGTTTTGGTACAACCGCTGGAGTTGTGGTTCTTGCTGGGACC 1428
|||||||||||||||| || |||||||| |||||||||||||| || |||||||||||
Sbjct 1671 CTGCTAGTTGAAATGGATGGATTTGGTACTACCGCTGGAGTTGTCGTCCTTGCTGGGACT 1730
Query 1429 AACAGACCGGATATT-TTGGATAAAGCTTTGTTAAGGCCTGGCCGTTTTGATCGCCAGAT 1487
||||| || |||||| || ||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 1731 AACAGGCCAGATATTCTT-GATAAAGCTTTATTACGGCCTGGCCGGTTTGATCGCCAGAT 1789
Query 1488 AACCATTGATAAACCTGATATTAAAGGGCGTGATCAGATTTTCCAGATTTACTTGAAGAA 1547
|||||| |||||||||||||||||||| ||||||||||| |||||||| ||| |||||||
Sbjct 1790 AACCATAGATAAACCTGATATTAAAGGCCGTGATCAGATATTCCAGATATACCTGAAGAA 1849
Query 1548 GATCAAACTTGATCATGAGCCATCATATTACTCTCAAAGGCTTGCGGCTCTCACTCCCGG 1607
||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1850 GATCAAACTTGATCACGAGCCCTCATATTACTCACAAAGGCTTGCAGCCCTCACTCCCGG 1909
Query 1608 ATTTGCTGGAGCTGACATTGCGAATGTCTGTAACGAAGCAGCTCTTATTGCTGCTAGACA 1667
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1910 ATTTGCTGGAGCTGACATTGCGAATGTCTGTAACGAGGCGGCTCTTATTGCTGCCAGACA 1969
Query 1668 CGAAGGAGCAACGGTTACAATGGCACACTTTGAATCTGCAATTGATCGTGTTATTGGTGG 1727
||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1970 TGAAGGAGCAACAGTTACAATGGCGCACTTTGACTCTGCAATCGATCGTGTTATTGGTGG 2029
Query 1728 TCTTGAGAAGAAAAACCGGGTGATAAGCAAGTTGGAGCGACGTACGGTTGCATATCATGA 1787
||| ||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||
Sbjct 2030 TCTGGAGAAGAAAAACCGGGTAATAAGCAAGCTGGAGCGCCGTACAGTTGCATATCATGA 2089
Query 1788 ATCTGGGCATGCAGTTG-TAGGATGGTTCCTCGAACATGCAGAGCCGTTGCTGAAAG-TG 1845
|||||| ||||| |||| | || |||||||| |||||||| || |||||||| |||| ||
Sbjct 2090 ATCTGGCCATGCGGTTGCTGGG-TGGTTCCTGGAACATGCGGAACCGTTGCT-AAAGGTG 2147
Query 1846 ACTATTGTACCACGTGGCACAGCGGCTCTCGGATTTGCACAATATGTTCCAAACGAAAAC 1905
|||||||| || ||||||||||| || ||||||||||| || ||||||||||| ||||||
Sbjct 2148 ACTATTGTTCCTCGTGGCACAGCAGCGCTCGGATTTGCCCAGTATGTTCCAAATGAAAAC 2207
Query 1906 CTT-CTCATGACCAAAGAGCAACTCTTTGACATGACTTGCATGACCCTCGGTGGCCGTGC 1964
|| |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||
Sbjct 2208 -TTGCTCATGACAAAAGAACAACTCTTTGATATGACTTGCATGACTCTCGGGGGCCGGGC 2266
Query 1965 AGCTGAGCAGGTATTGATAGGTAA-AATCTCAAC-GGGTGCGCAGAACGATCTAGAGAAG 2022
|||||| ||||||||||| || || ||| || || ||| || ||||||||||| || |||
Sbjct 2267 AGCTGAACAGGTATTGATTGG-AAGAATATCCACTGGG-GCTCAGAACGATCTGGAAAAG 2324
Query 2023 GTGACAAAGATGACGTATGCGCAAGTAGCTGTATACGGTTTCAGTGACAAGGTTGGCCTG 2082
||||| |||||||| ||||||||||| || || ||||| ||||| |||||| | || ||
Sbjct 2325 GTGACTAAGATGACTTATGCGCAAGTGGCAGTGTACGGATTCAGCGACAAGATAGGATTG 2384
Query 2083 CTCTCGTTTCCCCCAA-GGGATGATGGCTACGACTTCTCTAAACCATACAGCAACAAAAC 2141
|| || || ||| ||| |||| | | |||| ||||| || || |||||||||| |||
Sbjct 2385 CTTTCATT-CCCACAACGGGA--A-G---ACGAGTTCTCCAAGCCGTACAGCAACAGAAC 2437
Query 2142 AGGCGCTATCATAGACGAAGAAGTTAGGGAATGGGTGGCCAAAGCTTATGAGCGGACCGT 2201
|| || || ||||| ||||| || | |||||||||| |||||||| ||||||| ||
Sbjct 2438 CGGTGCGATGATAGATGAAGAGGTCCGAGAATGGGTGGGGAAAGCTTACAAGCGGACGGT 2497
Query 2202 AGAGCTGGTTGAGGAACACAAAGAGAAAGTGGCTCAGATCGCCGAGCTTTTACTAGAGAA 2261
|||||| | ||||||||||||||| |||||||||||||||| ||||| || ||||||||
Sbjct 2498 TGAGCTGATAGAGGAACACAAAGAGCAAGTGGCTCAGATCGCTGAGCTCTTGCTAGAGAA 2557
Query 2262 AGAGGTGTTGCATCAGGATGATCTCT-TAAAAGTTTTAGGTGAACGTCCATTTAAGTCCG 2320
||||| |||||||||||||||||| |||| || || || || ||||| |||||||| |
Sbjct 2558 GGAGGTTTTGCATCAGGATGATCTCACTAAA-GTATTGGGCGAGCGTCCGTTTAAGTCGG 2616
Query 2321 CTGAGGTGACTAATTATGACCGGTTCAAGTCTGGGTTTGAGGAGACTGAGAAGGA 2375
|||| || ||||| ||| |||| || ||||| ||||| ||| | ||||||||
Sbjct 2617 GTGAGACAACGAATTACGACAGGTTTAAATCTGGATTTGAAGAGTCGGAGAAGGA 2671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121905671490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5