BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg344726
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2333 0.0
AT1G07330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 292 7e-78
> AT2G29620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G07330.1);
Has 887 Blast hits to 750 proteins in 151 species: Archae
- 2; Bacteria - 63; Metazoa - 270; Fungi - 51; Plants - 111;
Viruses - 6; Other Eukaryotes - 384 (source: NCBI BLink). |
chr2:12662741-12665803 REVERSE LENGTH=2577
Length=2577
Score = 2333 bits (1263), Expect = 0.0
Identities = 1543/1675 (92%), Gaps = 32/1675 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAAAATTGATGCTAAAGATGTTTGCTTTATGGTTTGGAAAATTCTTAGATTCTCA 60
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAAATTTGATGCTAAAGATGTTTGCTTTATCGTTTGGAAAATTCTTAGATTCTCA 60
Query 61 ACGAATACAATTTTCAGATACGT-TAGAAGATACCCAATTGTTTCTGGTGTTTCTATGTT 119
||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 61 ACGAAAACAATTTTCAGATACGTGAAG-AGATACCCAATTGTTTCTGGTGTTTCTACGTT 119
Query 120 TTTGATCGTCTTGTATACTTTTCTTCCTTGGGTTTTCTATTTCTTGCTCTGTTCTTCTCC 179
||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TTTGATCATCTTGTACACTTTTCTTCCTTGGGTTTTCTATTTTTTGCTCTGTTCTTCTCC 179
Query 180 GTTGATAGCTTTTGGTTCGTTTTATATACGGAATCATCATCTGAGTACGAAGATCGGTGA 239
||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 180 TTTGATAGCTTTTGCTTCGTTTTATATACGGAATCATGATCTGAGTTCGAAGATTTGTGA 239
Query 240 TGAGGACAAGAGAACGGATCGTGGGTTATCCT-CGATTTCTCAAGAGGGAAGAACAGAGA 298
||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 240 TGAAGACAAGAGAAAGGATCGTGGGTTAT-CTACGATTTCTCAAGAGGGAAGAACAGAGA 298
Query 299 AGGCTAAGTTAAAGCACCAACAAAGTGTTCGACGAAATGCTAGAAGAAAAGTTGAAGAGG 358
|||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 299 AGGCTAAGTTAAAGCATCAACAAAGTGTTAGACGAAATGCAAGAAGGAAAGTTGAAGAGG 358
Query 359 TTGGGAAAGATTGGGATTCTTCTCAGGCTAGTGAGGATGAGAGAGGTAAGGTTATTTTGA 418
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 359 TTGGGAAAGATTGGGATTCGTCTCAAGCTAGTGAGGATGAGAGAGGTAAGGTTATTCTGA 418
Query 419 CTACTCTCTATGGGGAAGTATTACCGGAGACGATTAGTTCAGATATGGAGAAATTTAAGA 478
||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 419 CTACTCTCTATGGAGAAGTATTACCGGAGACGATTACACCAGATATGGAGAAATTCAAGA 478
Query 479 GAGAGAGGACGTTGCTTGTTGCGGAAG-AAACCTCCTTTAACTCTGTTGTTG--AGT--- 532
|||| ||||||||||||||||| |||| |||| | ||| |||||||| ||| | |
Sbjct 479 GAGAAAGGACGTTGCTTGTTGCAGAAGAAAACGT-ATTTGACTCTGTTCTTGACAATCAC 537
Query 533 -TAGA-----TT-CATTGGAGAGGTTAATAAGTGTTGAT-G-G-TGATGAAAGTGAAATT 582
||| || ||| |||||| |||||||||||||| | | ||||||||||||| ||
Sbjct 538 AGAGATCTTGTTGAATTAGAGAGGCTAATAAGTGTTGATGGTGATGATGAAAGTGAAGTT 597
Query 583 GAATGTTCATCATTATCATCagaagaagaagaaagggaagaagaagaaaggcgcgaagaT 642
||||||||||||| ||||||| |||| ||||| |||||||||||||||||| ||||||
Sbjct 598 GAATGTTCATCATCATCATCATCGGAAGGAGAAAAGGAAGAAGAAGAAAGGCGTGAAGAT 657
Query 643 ATAGGCAAGATCGTAGTACCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGG 702
|| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTAAGCAAGGTTGTAGTGGCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGG 717
Query 703 ACATCTGAGATTGAAAGGAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAGATCAAGG 762
||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 ACATCTGAGATCGAACGAAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAGGTCAAGG 777
Query 763 AGATTTTTCTTACTTGCTGCTGAAGGAAGCTTGAT-G--GATATGGAAGTTCCTCGGATT 819
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 778 AGATTTTTCTTACTTGCAGCTGAAGGAAGCTTGATGGATGATATGGAAGTTCCTCGGATT 837
Query 820 TGTATTGGTCGAAACTTTTATGATTTCGATAAAGGAAACTACGAAATCGATGGACTTCTC 879
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 838 TGTATTGGTCGAAACTTTTATGGTTTCGATAAAGGAAACTACGAAATCGATGGACTTGTC 897
Query 880 ATGCCAAGCTCTGCACCTTCTGTTTTATTACCAAGAAGAAACCCATTTGACCTTCCTTAC 939
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATGCCAGGCTCTGCACCTTCCGTTTTATTACCAAGAAGAAACCCATTTGACCTTCCTTAC 957
Query 940 GATCC-TCTGGAAGAGAAACCGAACTTGACAGGAGATAGTTTTCAGCAAGAGTTTGCTGA 998
||||| | ||||||||||||| ||| | ||||||||||||||||| ||||||||||||||
Sbjct 958 GATCCGT-TGGAAGAGAAACCAAACCTAACAGGAGATAGTTTTCAACAAGAGTTTGCTGA 1016
Query 999 GACTAACCGGAAAGATATCTTCTTTTGCCGCCATGAGAGCTTCCATCACAGGA-TTTTTC 1057
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1017 GACTAACCCTAAAGATATCTTCTTTTGCCGCCATGAGAGCTTCCATCACA-GAGCTTTTC 1075
Query 1058 CATCAGAATCTCAAAAAGATTCTAAATTGACGTCTTTGTGGAGAAATACAGTTGATGGTA 1117
|||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1076 CATCAGAATCTCAAAATGATTCTAAATTTACGTCTTTGTGGAGAAATGTAGTTGATGGTA 1135
Query 1118 GGCCTAAGCCACTACAAGGTAGCAATGATCAAGCACCTCTAATGAAAGAAAGAGGA-AAA 1176
|||||| ||||||||||||||||||| |||| | ||||||||||||||| ||| || |||
Sbjct 1136 GGCCTAGGCCACTACAAGGTAGCAATAATCAGGAACCTCTAATGAAAGAGAGA-GAGAAA 1194
Query 1177 GGAAATGATATGGAGGCAGGGGAGGTACGGATAGAGACGGATTCCATCAGAAACGATGAT 1236
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 GGAAATGATATGGAGGCAGGAGAGGTACGGATAGAGACAGATTCCATCAGAAACGATGAT 1254
Query 1237 AGTGACTCGAACGCATCGCTTTCTCCACGAGAAAGAGACAAAGATTTCAATGCCTC-GTA 1295
|||||||||||||||||||||||||||||||||||||| || |||||||||| ||| | |
Sbjct 1255 AGTGACTCGAACGCATCGCTTTCTCCACGAGAAAGAGAGAAGGATTTCAATGTCTCAG-A 1313
Query 1296 CCAATCAGATGCTTCCGGAACTTTCTGCAAACGAAATGATCGTCTTGGAAACTCTGTTGC 1355
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1314 CCAATCAGATGCTTCTGGAACTTTCTGCAAACGAAATGATCGTGTTGGAAACTCTGTTGC 1373
Query 1356 GGGTTTAGTGCCTAGAAGCAGTGGTTCGAGTTCACTAGCAACTGAAAGGCAAAGATACAT 1415
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1374 GGGTTTAGTGCCTAGAAGCAGTGGTTCGAGTTCACTAGCAACCGCGAGGCAAAGATACAT 1433
Query 1416 GGAGCATTTTGGTTACAGTACAAGAAAGTCTCATATGGTTACACATTCTGTTGACTCTGA 1475
||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1434 GGAGCATTTTGGTTACAATACAAGAAAATGTCATATGGTGACACATTCTGTTGACTCTGA 1493
Query 1476 TCTTCAAGTTGAGGTTTCTGAACTTGGATCACCTCCCACTTCAGTTGATGGGAATGACTC 1535
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1494 TCTTCAAGTTGAGGTTTCTGAACTTGGATCACCTCCAACTTCAGTTGATGGTAATGACTC 1553
Query 1536 TGATTATGAGAGATCTCTGTTTGTTTATGAATCGGAGATCGGAAAAGAAATGGGTTTTAA 1595
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1554 TGATTATGAAAGATCTCTGTTTGTTTATGAATCGGAGATGGGAAAAGAAATGGGTTATAA 1613
Query 1596 TGGTGGGGAATCTGAAGTCTTACTTGTGGGGAAAGATTATCAAGATCTAAATGAA 1650
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1614 TGGTGTGGAATCTGAAGTCTTACTTGTGGGGAAAGATGATCAAGATCAAAATGAA 1668
Score = 490 bits (265), Expect = 2e-137
Identities = 327/354 (92%), Gaps = 15/354 (4%)
Strand=Plus/Plus
Query 1687 GATGAGGAGTTGAAGGAAC-TTCCTGAGAACTCAGCTGATGAGATAAAGATAAGTTATGA 1745
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1756 GATGAGGAGTTGAAGGAACTTTCC-GAGAACTCAGCTGATGAGATAAAGATAAGTTATGA 1814
Query 1746 CTCTGTCGACGAACATGAACCATCCGAGAGGAC---TGATCAAGAATCTGAAGAACCTTA 1802
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1815 CTCTG---ACGAACATGAACCATCCGAGAGGACGACTGATCAAGAATTTGAAGAACCTTA 1871
Query 1803 TGAGAGAAATGATGGAGAGGAAATGCAACAACTCGCGGAAGCTGAAGCTTCTGATGTTAA 1862
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 1872 TGAGAGAAATGATGGAGAAGAAAGGCAACAACTCGTGGAAGCTGAAGCTTCTGATGTAAA 1931
Query 1863 TCATCATGGAAACTCTGAAGAGTCTGTTACTTCTCCAAGATCAGTGTTACCAGACATGAT 1922
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1932 TCATCATGGAAACTCTGAAGAATCTGTTACTTCTCCAAGATCAGTGTTACCAGACATG-T 1990
Query 1923 GTTACATCTAGACCAGACT-CATTCTGAGGTTCTGGATCATACATC-AGATGGTCAGCTG 1980
| |||||||||||||||| | || ||||||||||||||| |||| | |||||||||||
Sbjct 1991 -T-ACATCTAGACCAGACTGC-TTGGGAGGTTCTGGATCATGCATCTA-ATGGTCAGCTG 2046
Query 1981 CAAAATGTGGTTCCACCTGCTGAATCATCTCATTATCAATTAGATGAACGTATT 2034
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 2047 CAAAATGTGGATCCACCAGCTGAATCATCTCATTATCAATTAGATGGACGTATT 2100
Score = 215 bits (116), Expect = 2e-54
Identities = 135/144 (94%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 2075 ATGCCACAGGAACATTTCAGGAGAATCAAGAGGGCTTTGAAGTAACATTCAATGATGAGT 2134
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2102 ATGCCACAGGAACAATTCAGGAGAATCAAGAGGGATTTGAAGTAACATTCAATGATGAGT 2161
Query 2135 CTAATTCTGCTGAAGACCATAGACAGTCCATCAATCCATTGGCTGTAGAACTTAAAGA-C 2193
|||||||||| |||||||| |||||||||||| |||||||||||||||||||| | || |
Sbjct 2162 CTAATTCTGCAGAAGACCACAGACAGTCCATCGATCCATTGGCTGTAGAACTTGA-GAAC 2220
Query 2194 AATGAAACCGATGGAATCAATTGA 2217
||| ||||||||||||||||||||
Sbjct 2221 AATCAAACCGATGGAATCAATTGA 2244
> AT1G07330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G29620.1);
Has 597 Blast hits to 536 proteins in 121 species: Archae
- 2; Bacteria - 47; Metazoa - 170; Fungi - 43; Plants - 98;
Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). |
chr1:2251131-2253585 FORWARD LENGTH=2058
Length=2058
Score = 292 bits (158), Expect = 7e-78
Identities = 403/516 (78%), Gaps = 38/516 (7%)
Strand=Plus/Plus
Query 535 GATTCATTGGAGAGGTT-AATAAGTGTTGATGGTGATGAAAGTGAAATTGAATGTTCATC 593
||| ||| ||||||||| | | |||| | ||||| |||| || || || ||||||||
Sbjct 367 GATCCATCGGAGAGGTTGACT-AGTG--G-TGGTGGCGAAACCGAGATCGAGTGTTCATC 422
Query 594 ATTATCATCagaagaagaagaaagggaagaagaaga-aaggcgcgaagaTATAGGCAAGA 652
|||||||||| |||| || ||||||||| | | || ||||| | | ||||
Sbjct 423 ---GTCATCAGAAGGCGAAG-AA--GAAGAAGAA-ACTACACGTGAAGACA-A--AAAGA 472
Query 653 TCGTAGTACCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGGACA-TCTGAG 711
| | ||| | ||||||||||||||||| ||||||||||||||| || ||| | ||||||
Sbjct 473 T--T-GTAGCTTGGACAGAGGATGATCAAAAGAATTTGATGGAT-TTAGGAAACTCTGAG 528
Query 712 ATTGAAAGGAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAG-ATCAAGGAGATTTTT 770
|| ||| | ||||||||||||||| |||||||| |||||||||| || |||||||| |
Sbjct 529 ATGGAACGTAACAAGAGGTTAGAGCATTTGATTACTAGAAGAAGAAT-GAGGAGATTAGT 587
Query 771 CTTACTTGCTGCTGAAG-GAAGCTTGATGGATATGGAAGTTCCT-CGGATTTGTATTGGT 828
| |||||| |||| || | ||||| |||||||||||||||||| | | | ||| ||||
Sbjct 588 CCGACTTGCCGCTG-AGAGTAGCTTAATGGATATGGAAGTTCCTCCAG-TCTGTGTTGGA 645
Query 829 CGAAACT-TTTATGATTTCGATAAAGGAAACTACGA-AATCGATGGACTTCTCATGCCAA 886
|| |||| ||| | ||| ||| ||| |||||| | | | ||||| |||| |||||
Sbjct 646 CGGAACTATTT-CGGTTTGGATCAAGAAAACTA-TATAGTTGATGGTCTTCAAATGCC-T 702
Query 887 G-CTCTGCACCTTCTGTTTTATTACCAA-GAAGAAACCCATTTGACCTTCCTTACGATCC 944
| |||||||||||||| |||||||||| || |||||| ||||| ||||||| |||||
Sbjct 703 GAATCTGCACCTTCTGTGTTATTACCAACTAA-AAACCCTTTTGATATTCCTTATGATCC 761
Query 945 TCTGGAAGAGAAACCGAACTTGACAGGAGATAGTTTTCAGCAAGAGTTTGCTGAGACTAA 1004
| |||||||| || ||| | |||||||||||||||||||||||||||| || | ||
Sbjct 762 ACAAGAAGAGAAGCCTAACCTCTCAGGAGATAGTTTTCAGCAAGAGTTTGC--AGCC-AA 818
Query 1005 CCGGAAAGATATCTTCTTTTGCCGCCATGAGAGCTT 1040
|| || ||||||||||| ||||||||||| |||||
Sbjct 819 CCCTAATGATATCTTCTTCTGCCGCCATGAAAGCTT 854
Score = 178 bits (96), Expect = 2e-43
Identities = 135/153 (88%), Gaps = 5/153 (3%)
Strand=Plus/Plus
Query 286 GGAAG-AAC-AGAGAAGGCTAAGTTAAAGCACCAACAAAGTGTTCGACGAAATGCTAGAA 343
||||| ||| || ||||||| | ||||||||||||| ||||||||||||||| |||||||
Sbjct 81 GGAAGAAACAAG-GAAGGCTGACTTAAAGCACCAACGAAGTGTTCGACGAAACGCTAGAA 139
Query 344 GAAAAGTTGAAGAGGTTGGGAAAGATTGGGATTCTTCTCAGGCTAGTGAGGATGAGAGAG 403
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 140 GGAAAGTTGAAGAGGTTGGGAAAGATTGGGACTCTTCTCAGGCTAGTGAAGATGAGAGAG 199
Query 404 GTA-AGGTTATTTTGACTACTCTCTATGGGGAA 435
| || | ||||| || ||||||||||| |||
Sbjct 200 ACAGAG-TCATTTTAACAACTCTCTATGGTGAA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109989394095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5