BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg345443
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37130.1 | Symbols: | Peroxidase superfamily protein | chr2... 1585 0.0
> AT2G37130.1 | Symbols: | Peroxidase superfamily protein | chr2:15597921-15600077
REVERSE LENGTH=1361
Length=1361
Score = 1585 bits (858), Expect = 0.0
Identities = 942/984 (96%), Gaps = 0/984 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAATGCGAAGCACTTTTGTCTCTTCGGGGTCTTTTGTCTGTTATTACAGTTATTC 60
|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 74 ATGGCCAATGCGAAGCCCTTTTGTCTCCTCGGCTTCTTTTGTCTGTTATTACAGTTATTC 133
Query 61 TCCATCTTCCGTATCGGAAATGGGGAATTGGAGATGAACTATTACAGAGAAAGTTGTCCA 120
|||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 134 TCCATCTTCCATATCGGAAATGGGGAATTGGAGATGAACTATTACAAAGAGAGTTGTCCA 193
Query 121 AAAGCGGAAGAGATTATAAGACAACAAGTGGAGACGCTTTACTACAAACACGGCAACACA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 194 AAAGCGGAAGAGATAATAAGACAACAAGTGGAGACGCTTTACTACAAACACGGTAACACA 253
Query 181 GCCGTATCTTGGCTCCGTAATCTCTTCCATGACTGCGTCGTCAAGTCGTGTGATGCGTCG 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 254 GCCGTATCTTGGCTCCGTAATCTCTTCCATGACTGTGTCGTCAAGTCGTGTGATGCGTCG 313
Query 241 CTGCTTCTAGAGACAGCGAGAGGTGTGGAATCTGAGCAGAAATCGAAGAGGAGTTTCGGT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CTGCTGCTAGAGACAGCGAGAGGTGTGGAATCTGAGCAGAAATCGAAGAGGAGTTTCGGT 373
Query 301 ATGAGAAACTTTAAGTACGTTAAGATTATCAAAGACGCACTCGAGAAAGAGTGTCCTTCA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 ATGAGAAACTTTAAGTACGTTAAGATTATCAAAGACGCACTCGAGAAAGAGTGTCCTTCC 433
Query 361 ACAGTTTCTTGCGCTGATATAGTCGCTCTCTCTGCTAGAGACGGTATTGTCATGCTGAAA 420
||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||| |||||
Sbjct 434 ACAGTCTCTTGTGCTGATATTGTCGCTCTTTCTGCGAGAGACGGTATTGTCATGTTGAAA 493
Query 421 GGGCCAAAGATAGAGATGATAAAGACAGGAAGGAGAGATAGCAGAGGGAGCTATTTGGGA 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 494 GGGCCAAAGATAGAGATGATAAAGACAGGAAGGAGAGATAGTAGAGGGAGCTACTTGGGA 553
Query 481 GATGTTGAGACTCTAATCCCTAACCACAATGACTCTCTTTCCTCTGTTATATCCACCTTT 540
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 554 GATGTTGAGACTCTAATCCCTAACCACAATGACTCTCTCTCATCTGTTATCTCCACCTTT 613
Query 541 AACTCCATTGGTATCGATGTCGAAGCCACCGTCGCTCTCTTAGGTGCTCACTCAGTGGGT 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 AACTCCATTGGCATCGATGTCGAAGCCACCGTCGCTCTCTTAGGTGCTCACTCAGTGGGT 673
Query 601 AGGGTCCACTGCGTTAACCTAGTGCACCGGCTATACCCAACGATTGACCCGACTCTCGAC 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 674 AGGGTCCACTGCGTTAACCTAGTGCACCGGCTATACCCAACGATTGACCCTACTCTCGAC 733
Query 661 CAAAGTTATGCCCTTTACTTAAAAAATCGTTGCCCAAGTCCAACACCGGACCCGAACGCC 720
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 734 CCAAGTTACGCCCTTTACTTAAAAAAACGTTGCCCAAGTCCAACACCGGACCCGAACGCC 793
Query 721 GTCTTGTACTCCCGCAACGATCGTGAGACTCCGATGGTTGTGGACAACATGTATTACAAG 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 794 GTCTTGTACTCCCGTAACGATCGTGAGACTCCGATGGTTGTGGACAACATGTATTATAAG 853
Query 781 AATATCATGGCACATAAGGGGCTTCTTGTCATTGATGATGAGCTAGCCACCGATCCGAGG 840
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 854 AACATCATGGCCCATAAGGGGCTTCTTGTCATTGATGATGAGCTAGCCACCGATCCCAGG 913
Query 841 ACCGCACCGTTTGTCGCCAAGATGGCTACGGACAATGGTTACTTCCATGAGCAGTTCTCA 900
|||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 914 ACCGCACCGTTTGTGGCCAAGATGGCTGCGGACAATAATTACTTCCATGAGCAGTTCTCA 973
Query 901 CGTGGCGTCAGACTCTTGTCCGAGACCAACCCACTCACTGGAGACCAAGGGGAGATCAGG 960
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 974 CGTGGCGTCAGGCTCTTGTCCGAGACCAACCCGCTCACGGGAGACCAAGGGGAGATCAGG 1033
Query 961 AAGGATTGCCGATATGTGAACTAA 984
|||||||| || ||||||||||||
Sbjct 1034 AAGGATTGTCGTTATGTGAACTAA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5