BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg346658 Length=504 Score E Sequences producing significant alignments: (Bits) Value AT2G01590.1 | Symbols: CRR3 | chlororespiratory reduction 3 | c... 531 3e-150 > AT2G01590.1 | Symbols: CRR3 | chlororespiratory reduction 3 | chr2:266630-267798 FORWARD LENGTH=989 Length=989 Score = 531 bits (287), Expect = 3e-150 Identities = 374/414 (90%), Gaps = 14/414 (3%) Strand=Plus/Plus Query 92 CTCCGTCGAAGAAACCGGCAAAACTAAGCA-AAGTGAGCAAACAAATGGGAAATCAAAAC 150 ||||||| ||||||||| ||||||||| | ||||||||||||||||||||| ||||||| Sbjct 170 CTCCGTCAAAGAAACCGTTAAAACTAAG-ACAAGTGAGCAAACAAATGGGAAGTCAAAAC 228 Query 151 CAGCAATTACGGAAGCAGCGACGAGGCAACAAGCCTTCGATAGCTCAGATCGAGCGAGCA 210 ||| | | | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 229 CAG------C---A--A-CGACGAGGCAACAAGCCTTCGATAGCACAGATTGAGAGAGCT 276 Query 211 TTTGGCGCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT 270 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 TTTGGCTCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT 336 Query 271 GAGCTTTTACTAGGCCATGCTAATAAATTCGAAAGTAAGCTGGAGAAGAAGCTACGAGAG 330 |||||| || ||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 337 GAGCTTCTATTAGGCCATGCTAATAAATTCGAAAGTAAGATCGAGAAGAAGCTACGGGAG 396 Query 331 ATTGGGGAAATCTTCGTAGCTCGAACAGAGCCTAAGCTCCGTTCCTCCGGGAAACCAGTT 390 ||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 397 ATTGGCGAAATCTTTGTAGCTCGAACAGAGCCTAAGCTTCGTTCCTCGGGGAAACCAGTT 456 Query 391 CTGATGTTTACACTTCAATGGATTCTTCCCATATGGATTATGTCTCTGCTCATAGCTTGT 450 ||||||||||| |||||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 457 TTGATGTTTACAATTCAATGGATTCTTCCAATATGGATTATGTCACTGCTCGTAGCTTGT 516 Query 451 GGAGTTATCAAACTCCCTTTTAGCCTCCCATTACTTGATGACTTGATCATGTGA 504 |||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 517 GGAGTTATCAAACTCCCTTTTAGCATCCCTTTCCTTGATGACTTGATCATGTGA 570 Score = 139 bits (75), Expect = 2e-32 Identities = 85/90 (94%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1 ATGGCGGTCTTATCCACCATCTTCTCTATCACCAGAGCTTCAACGCCTCCTATGGCGTCT 60 |||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| Sbjct 46 ATGGCGGTGTTATCCACCATCTACTCCATCACCAGAGCTTCAACGCCTACTATGGCGTCT 105 Query 61 CTAACTAATGACTCACCCTCTCCACTTCCT 90 ||||||||||||||||| |||||||||||| Sbjct 106 CTAACTAATGACTCACCGTCTCCACTTCCT 135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24062156413 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5