BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346658

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01590.1 | Symbols: CRR3 | chlororespiratory reduction 3 | c...   531    3e-150


> AT2G01590.1 | Symbols: CRR3 | chlororespiratory reduction 3 | 
chr2:266630-267798 FORWARD LENGTH=989
Length=989

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 374/414 (90%), Gaps = 14/414 (3%)
 Strand=Plus/Plus

Query  92   CTCCGTCGAAGAAACCGGCAAAACTAAGCA-AAGTGAGCAAACAAATGGGAAATCAAAAC  150
            ||||||| |||||||||  ||||||||| | ||||||||||||||||||||| |||||||
Sbjct  170  CTCCGTCAAAGAAACCGTTAAAACTAAG-ACAAGTGAGCAAACAAATGGGAAGTCAAAAC  228

Query  151  CAGCAATTACGGAAGCAGCGACGAGGCAACAAGCCTTCGATAGCTCAGATCGAGCGAGCA  210
            |||      |   |  | |||||||||||||||||||||||||| ||||| ||| |||| 
Sbjct  229  CAG------C---A--A-CGACGAGGCAACAAGCCTTCGATAGCACAGATTGAGAGAGCT  276

Query  211  TTTGGCGCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT  270
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  TTTGGCTCTGGATCATATCGTGATTCCGAAGGGGAAATGGATATGAATACGGTATTCGAT  336

Query  271  GAGCTTTTACTAGGCCATGCTAATAAATTCGAAAGTAAGCTGGAGAAGAAGCTACGAGAG  330
            |||||| || ||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct  337  GAGCTTCTATTAGGCCATGCTAATAAATTCGAAAGTAAGATCGAGAAGAAGCTACGGGAG  396

Query  331  ATTGGGGAAATCTTCGTAGCTCGAACAGAGCCTAAGCTCCGTTCCTCCGGGAAACCAGTT  390
            ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  397  ATTGGCGAAATCTTTGTAGCTCGAACAGAGCCTAAGCTTCGTTCCTCGGGGAAACCAGTT  456

Query  391  CTGATGTTTACACTTCAATGGATTCTTCCCATATGGATTATGTCTCTGCTCATAGCTTGT  450
             ||||||||||| |||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct  457  TTGATGTTTACAATTCAATGGATTCTTCCAATATGGATTATGTCACTGCTCGTAGCTTGT  516

Query  451  GGAGTTATCAAACTCCCTTTTAGCCTCCCATTACTTGATGACTTGATCATGTGA  504
            |||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct  517  GGAGTTATCAAACTCCCTTTTAGCATCCCTTTCCTTGATGACTTGATCATGTGA  570


 Score =  139 bits (75),  Expect = 2e-32
 Identities = 85/90 (94%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGTCTTATCCACCATCTTCTCTATCACCAGAGCTTCAACGCCTCCTATGGCGTCT  60
            |||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct  46   ATGGCGGTGTTATCCACCATCTACTCCATCACCAGAGCTTCAACGCCTACTATGGCGTCT  105

Query  61   CTAACTAATGACTCACCCTCTCCACTTCCT  90
            ||||||||||||||||| ||||||||||||
Sbjct  106  CTAACTAATGACTCACCGTCTCCACTTCCT  135



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5