BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347017
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26570.1 | Symbols: PHT2;1, ORF02 | phosphate transporter 2;... 2750 0.0
> AT3G26570.1 | Symbols: PHT2;1, ORF02 | phosphate transporter
2;1 | chr3:9756225-9758633 FORWARD LENGTH=2098
Length=2098
Score = 2750 bits (1489), Expect = 0.0
Identities = 1674/1765 (95%), Gaps = 5/1765 (0%)
Strand=Plus/Plus
Query 1 ATGACTCTTCCTTATCGTTTCTCTTCGGTTAGAAACCACTCGCTACTACTTAAGACTTCT 60
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 115 ATGACTCTTCCTTATCGTTTCTCTTCCGTTAGAAACCACTCACTTCTACTTAAGACTTCT 174
Query 61 CATCTCTACACACCTAGATCAGCTCTT-G--GTTGTTTCTCTCCCAAGGAATCTCCTTTC 117
||||||| |||||| |||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 175 CATCTCTGCACACCCAGATCAGCTCTTGGTTGTTGTTTCTCTCCCAAGGAATCCCCTTTC 234
Query 118 TTCAAGAAGAACACTGCCCAATTCCTTTCTCCTCAGAAACACACTTCTCTTCCTCTGAAA 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTCAGGAAGAACACTGCCCAATTCCTTTCTCCTCAGAAACACACTTCTCTTCCTCTGAAA 294
Query 178 CTTGTCTGCCCTTTAGCTAGTTTCTCTTCTTATGCGGATTCTGAGGGAGAAGAGCAACAC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTTGTCTGCCCTTTAGCTAGTTTCTCTTCTTATGCGGATTCTGAGGGAGAAGAGCAACAC 354
Query 238 CATGCTGATCAACCGATACAGAATTCTCACGAATCTTCTACCGATTCGAGTGGATCAGAT 297
||||||||||||||||||||||| |||||||||||||||||| ||| | | |||||||
Sbjct 355 CATGCTGATCAACCGATACAGAACCCTCACGAATCTTCTACCGTTTCAAACGAATCAGAT 414
Query 298 GGGAAAGGTAATGCAGAGGCCACTGGTGACTTTTCTGGAATGGCTCAAGCCTTTCACATT 357
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 415 GGGAAAGGTAATGCAGAAGCTACTGGAGACTTTTCTGGAATGGCTCAAGCCTTTCACATT 474
Query 358 TCATCGACAACAGCGAGGGCAATCTCCATAGTCATCGCCTTTTCTGCTCTCACCCTTCCA 417
|| || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 475 TCTTCCACAACAGCAAGGGCAATCTCTATAGTCATCGCCTTCTCTGCTCTCACCCTTCCA 534
Query 418 ATCTTCATGAAGTCCCTGGGGCAAGGACTGGCTCTCAAGACCAAGCTTCTCTCTTACGCA 477
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATCTTCATGAAGTCCCTGGGACAAGGACTGGCTCTCAAGACCAAGCTTCTCTCTTACGCA 594
Query 478 ACACTACTCTTTGGTTTCTACATGGCCTGGAACATCGGAGCTAACGATGTTGCCAATGCT 537
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 595 ACACTACTCTTTGGTTTCTACATGGCCTGGAACATCGGAGCTAATGATGTCGCAAATGCC 654
Query 538 ATGGGGACTTCTGTTGGATCTGGAGCACTA-ACTATACGACAAGCTGTGATGACGGCTGC 596
|||||||||||||||||||||||||| || || || || |||||||||||||| |||||
Sbjct 655 ATGGGGACTTCTGTTGGATCTGGAGC-CTTGACAATCCGGCAAGCTGTGATGACAGCTGC 713
Query 597 AGTTCTTGAATTCTCAGGTGCTCTTTTGATGGGAACTCACGTGACCAGCACGATGCAGAA 656
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 AGTTCTCGAATTCTCAGGTGCTCTTTTGATGGGAACTCACGTGACTAGCACGATGCAGAA 773
Query 657 AGGGATTCTCATGGCTAATGTGTTCCAAGGGAAAGATATGTTGCTCTTTGCTGGTCTCCT 716
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGGAATTCTCATGGCTAATGTGTTCCAAGGGAAAGATATGTTGCTCTTTGCTGGTCTCCT 833
Query 717 CTCTTCCTTGGCTGCAGCTGGAACTTGGTTACAGGTAGCTTCTTACTATGGATGGCCAGT 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTCTTCCTTAGCTGCAGCTGGAACTTGGTTACAGGTAGCTTCTTACTATGGATGGCCAGT 893
Query 777 ATCGACCACTCACTGTATCGTCGGATCAATGGTTGGGTTTGGGCTTGTTTACGGAGGAGC 836
||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 894 ATCAACAACTCACTGTATCGTCGGATCAATGGTTGGGTTTGGGCTTGTATATGGAGGAGC 953
Query 837 TGGTGCTGTTTTCTGGAGTTCTCTAGCTAAAGTAGCTTCATCTTGGGTTATCTCTCCTCT 896
|||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 954 TGGTGCCGTTTTCTGGAGTTCCCTAGCTAAAGTAGCTTCATCTTGGGTCATCTCTCCTAT 1013
Query 897 ATTGGGAGCTCTTGTCTCCTTTCTTGTCTACAAATGCATTAGGAGATTTGTTTATAGTGC 956
| ||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 1014 ACTGGGAGCTCTTGTCTCCTTCCTAGTCTACAAATGCATCAGGAGATTTGTTTACAGTGC 1073
Query 957 ACCAAACCCGGGACAAGCAGCAGCTGCGGCTGCTCCAGTCGCTGTGTTCGTAGGTGTGGC 1016
||||||||| ||||||||||| ||||| || ||||| |||||||| || |||||||||||
Sbjct 1074 ACCAAACCCAGGACAAGCAGCGGCTGCTGCCGCTCCCGTCGCTGTATTTGTAGGTGTGGC 1133
Query 1017 CAGTATCTCCTCAGCCGCATTGCCTCTAAGTAAGATATTTCCAATAGCTCTATCACAAGC 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1134 CAGTATCTCCTCAGCCGCATTGCCTCTAAGTAAGATCTTTCCAATAGCTCTATCACAAGC 1193
Query 1077 CTTAGCCTGTGGAGTAGCAGGAGCCATTGTCTTTGACAGAATCATCCGCAAACAACTCGG 1136
||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct 1194 CTTAGCCTGTGGAGTAGCAGGAGCCATAGTATTCGACAGAATCATCCGCAAACAGCTCGG 1253
Query 1137 TCACCTCCTAGCTAAAACCAAATCACCAGAAACATCTCAAAACCAGCCCAAAACCATCGG 1196
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1254 TCACCTCCTAGCTAAAACAAAATCACCAGAAACATCTCAAAACCAACCCAAAACCATTGG 1313
Query 1197 TTTCCTCTCCGATATCGCAGGACCAACAGGTACACAACTCGAAATAGTCTACGGAATCTT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TTTCCTCTCCGATATCGCAGGACCAACAGGTACACAACTCGAAATAGTCTACGGAATCTT 1373
Query 1257 TGGCTATATGCAAGTCCTCTCCGCTTGCTTCATGTCATTCGCTCACGGAGGCAACGATGT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1374 TGGCTATATGCAAGTCCTCTCCGCTTGCTTCATGTCATTCGCTCACGGAGGCAACGACGT 1433
Query 1317 ATCCAACGCAATCGGACCATTAGCCGCCGCTTTAAGCATCCTCCAAAACGGAGCAGCTGC 1376
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1434 CTCCAACGCAATCGGACCATTAGCCGCCGCATTAAGCATTCTCCAAAACGGAGCAGCTGC 1493
Query 1377 AGGAGGAGCCGAAATCGTTATCCCCATGGATGTTCTCGCTTGGGGAGGATTCGGAATCGT 1436
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1494 AGGAGGAGCCGAGATCGTTATCCCAATGGATGTTCTCGCTTGGGGAGGATTCGGAATCGT 1553
Query 1437 TGCTGGTCTCACAATGTGGGGATACAGAGTCATTGCAACGATAGGGAAGAAGATCACTGA 1496
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1554 TGCTGGTCTCACAATGTGGGGATACAGAGTCATCGCAACGATAGGGAAGAAGATCACTGA 1613
Query 1497 ACTTACACCAACAAGAGGATTCGCGGCGGAATTCGCCGCCGCGTCGGTGGTTTTGTTTGC 1556
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1614 GCTAACACCAACAAGAGGATTCGCTGCGGAATTCGCCGCCGCGTCGGTTGTTTTGTTTGC 1673
Query 1557 TTCGAAATTAGGGCTTCCGATTTCAGCGACTCATACACTTGTTGGAGCTGTGATGGGTGT 1616
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1674 TTCGAAATTAGGGCTTCCGATTTCTGCGACTCATACACTTGTTGGTGCTGTGATGGGTGT 1733
Query 1617 TGGTTTCGCTAGAGGGCTTAATAGTGTCAGAGCTGAGACTGTGAGAGAGATTGTTGCTTC 1676
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1734 TGGTTTCGCTAGAGGGCTTAATAGTGTGAGAGCTGAGACTGTGAGAGAGATCGTTGCTTC 1793
Query 1677 GTGGCTCGTCACCATTCCCGTCGGAGCTACACTCTCCGTCATCTACACTTGGATTTTCAC 1736
|||||| |||||||||||||| || ||||||||| |||| ||||||||||||||||||||
Sbjct 1794 GTGGCTTGTCACCATTCCCGTTGGTGCTACACTCGCCGTTATCTACACTTGGATTTTCAC 1853
Query 1737 CAAGATCTTATCTTTTGTGTTATGA 1761
|||||||||||||||||| || |||
Sbjct 1854 CAAGATCTTATCTTTTGTATTGTGA 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5