BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348033
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49340.1 | Symbols: | Cysteine proteinases superfamily prot... 1541 0.0
AT2G27420.1 | Symbols: | Cysteine proteinases superfamily prot... 761 0.0
> AT3G49340.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:18293347-18294577 REVERSE LENGTH=1026
Length=1026
Score = 1541 bits (834), Expect = 0.0
Identities = 964/1028 (94%), Gaps = 4/1028 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCGATCATTTTCTTTCTTCTAGCCATTATTTTGAGTTCCAGAACTTCAGGAGCC 60
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1 ATGACTTCGATCGTTTTCTTTCTTCTAGCCATTCTTTTGAGTTCCAGAACTTCAGGAGTC 60
Query 61 ACATCTCGTGGGGGGCTCTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATGGATGTCT 120
||||||||||| |||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 61 ACATCTCGTGGCGGGCTCTTTGAAGCTTCTGCCGTAGAGAAACATGAGCAATGGATGTCT 120
Query 121 CGATTCCATCGCGTTTACTCAGACGATTCTGAGAAAACGAGTAGGTTTGAGATCTTTAAG 180
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 CGATTCAATCGCGTGTACTCAGACGATTCTGAGAAAACGAGTAGGTTCGAGATCTTTACG 180
Query 181 AAGAACTTAAAGTTCGTCGAGAGCTTCAACATGAATACGAACAAAACGTACACGTTGGAT 240
|| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 181 AATAACTTAAAGTTTGTCGAGAGCATCAATATGAATACGAACAAAACGTACACGTTGGAT 240
Query 241 GTTAACGAGTTCTCTGATCTAACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTG 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTAACGAGTTCTCTGATCTCACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTG 300
Query 301 GTGCCCGAAGGTATGACCAGAATGTCAACAACGGATTCTCATGAAACGGTATCGTTTAGA 360
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 301 GTGCCCGAAGGTATGACCAGAATTTCAACAACTGATTCTCATGAAACGGTATCGTTTAGA 360
Query 361 TATGAAAATGTTGGTGAAACCGGTGAGAGCATGGATTGGAGAGAGGAAGGGGCTGTTACA 420
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 361 TATGAAAACGTTGGTGAAACCGGTGAGAGCATGGATTGGATACAGGAAGGGGCTGTTACA 420
Query 421 TCCGTTAAGCACCAACAACAATGTGGAGGATGTTGGGCGTTT-TCCGCGGTGGCGGCAGT 479
||||||||||||||||||||||||||| | || ||||| ||| || |||||||| |||||
Sbjct 421 TCCGTTAAGCACCAACAACAATGTGGATGTTGCTGGGC-TTTCTCGGCGGTGGCAGCAGT 479
Query 480 GGAAGGCATTACAAAGATTGCTAAAGGCGAGCTCGTGTCGCTGTCTGAGCAGCAACTGTT 539
||||||||| || |||||||| || || ||||| || |||||||||||||||||||||||
Sbjct 480 GGAAGGCATGACGAAGATTGCGAATGGAGAGCTTGTATCGCTGTCTGAGCAGCAACTGTT 539
Query 540 GGATTGTAGTACGGAAAACGATGGATGTGACGGAGGGATAATGTGGAAAGCTTTCGACTA 599
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GGATTGTAGTACGGAAAACAATGGATGTGGCGGAGGGATAATGTGGAAAGCTTTCGACTA 599
Query 600 CATTGTAGAAAACCAAGGAATCACCGCAGAGGATAATTATCCCTACCAAGGAGCACAACA 659
|||| |||||||||||| |||||| |||||||||| ||||| |||||||||||||||||
Sbjct 600 CATTAAAGAAAACCAAGGTATCACCACAGAGGATAACTATCCTTACCAAGGAGCACAACA 659
Query 660 AACCTGTGAGTCAAATCATGTAGCTGCTGCTACCATCAGCGGATACGAAACGGTTCCCCA 719
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACATGTGAGTCAAATCATCTAGCTGCTGCTACCATCAGCGGATACGAAACGGTTCCCCA 719
Query 720 AAATGACGAGGAAGCATTGCTAAAAGCGGTGTCTCAACAGCCTGTTTCCGTGGCGATAGA 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 720 AAATGACGAGGAAGCATTGCTAAAAGCAGTGTCTCAACAGCCTGTTTCCGTGGCGATCGA 779
Query 780 AGGGTCAGGATATGAGTTTATACACTACTCAGGCGGGATATTTAACGGAGAGTGTGGGAC 839
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 780 AGGGTCAGGATATGAGTTTATACACTACTCGGGAGGGATATTTAACGGAGAGTGTGGGAC 839
Query 840 GCAT-TTGAATCATGCGGTTACGATTGTTGGTTATGGGGTGAGCGAAGAAGGGATTAAGT 898
||| || | |||||| ||||| || |||||||||||||||||||||||||| || ||||
Sbjct 840 GCAGCTT-ACTCATGCAGTTACTATAGTTGGTTATGGGGTGAGCGAAGAAGGCATCAAGT 898
Query 899 ATTGGTTGTTGAAGAACTCGTGGGGAGAATCTTGGGGAGAAGATGGTTATATGAGAATCA 958
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 ATTGGTTGTTGAAGAACTCATGGGGAGAATCTTGGGGAGAAAATGGTTATATGAGAATCA 958
Query 959 TGAGAGACGTAGATGCACCTCAAGGAATGTGTGGTTTGGCCAGCCTTGCTTACTATCCAG 1018
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAGAGACGTAGATTCACCTCAGGGAATGTGTGGTTTGGCCAGCCTTGCTTACTATCCAG 1018
Query 1019 TAGCTTGA 1026
| ||||||
Sbjct 1019 TTGCTTGA 1026
> AT2G27420.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:11726144-11727614 REVERSE LENGTH=1309
Length=1309
Score = 761 bits (412), Expect = 0.0
Identities = 843/1045 (81%), Gaps = 54/1045 (5%)
Strand=Plus/Plus
Query 20 TTC-TTCTAGCCATTATTTTGAGTTCCAGAACTTCAG-GAGCCACATCTCGTGGGGGGCT 77
||| ||||| | ||| |||| |||| ||||||||| | ||| ||||||||||| | ||
Sbjct 114 TTCATTCTAACTATTTTTTTAAGTTACAGAACTTC-GCTAGCTACATCTCGTGGTAGCCT 172
Query 78 CTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATGGATGTCTCGATTCCATCGCGTTTA 137
|||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 173 TTTTGAAGCTTCTGCCATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTA 232
Query 138 CTCAGACGATTCTGAGAAAACG-AGTAGGTTTGAGATCTTTAAGAAGAACTTAAAGTTCG 196
||| ||||| | ||||||| | | | ||||| | ||||| |||||||| || ||||||
Sbjct 233 CTCTGACGAAACCGAGAAAA-GAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCG 291
Query 197 TCGAGAGCTTCAACATGAATACGAACAA-AACGTAC-ACGTTGGATGTTAACGAGTTCTC 254
|| ||| |||||||||||||| || || |||||| | ||| ||| | |||||||||||
Sbjct 292 TCCAGAACTTCAACATGAATAATAA-AATCACGTACAAGGTT-GATATCAACGAGTTCTC 349
Query 255 TGATCTAACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTGGTGCCCGAAGG-TA 313
|||||| || ||||| |||||| ||||| |||| || || || ||||||| ||| ||
Sbjct 350 TGATCTTACGGACGAAGAATTTCGGGCGACACACACTGGACTAGTTGTGCCCG-AGGCTA 408
Query 314 TGACCAGAATGTCAACAAC-GGATTC--TCATGAA-ACGGTATCGTTTAGATATGAAAAT 369
| |||||||| ||||| | | ||| || || ||||| |||||||||||| |||
Sbjct 409 TAACCAGAATTTCAAC-TCTGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAAT 467
Query 370 GTTGGTGA-AACCGGTGAGAGCATGGATTGGAGAGAGGAAGGGGCTGTTACATCCGTTAA 428
||| |||| || || |||||||||||||||||| | || |||||||||||| |||||||
Sbjct 468 GTTAGTGATAA-TGGCGAGAGCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAA 526
Query 429 GCACCAACAACAATGTGGAGGATGTTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCAT 488
| | ||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 527 GTATCAAGGCCGATGTGGAGGATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCAT 586
Query 489 TACAAAGATTGCTAAAGGCGAGCTCGTGTCGCTGTCTGAGCAGCAACTGTTGGATTGTAG 548
|||||||||| ||||||||||||| || ||||| || ||||| ||||| || || || |
Sbjct 587 TACAAAGATTACTAAAGGCGAGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGC-G 645
Query 549 TAC-G-GA--A-AA-CGATGGATGT-GACGGAGGGATAATGTGGAAAGCTTTCGACTACA 601
|| | || | || | | |||||| | ||||||||||||| |||||||||||| ||||
Sbjct 646 -ACAGAGACTACAATCAA-GGATGTCGT-GGAGGGATAATGTCGAAAGCTTTCGAGTACA 702
Query 602 TTGT-AGAAAACCAAGGAATCACCGCAGAGGATAATTATCCCTACCAAGGAGCACAACAA 660
| | | |||||||||| ||||| | |||||||| ||||| ||||||| | ||||||||
Sbjct 703 TAATCA-AAAACCAAGGCATCACTACTGAGGATAACTATCCATACCAAGAATCACAACAA 761
Query 661 ACCTGTGAGT-CA--AA-T-CA-TGT-A--G-CTG--C-TGCTA-CCA---TCAGCGGAT 703
|| ||| ||| || || | | | | | | || | ||| | ||| |||||||||
Sbjct 762 ACTTGT-AGTTCATCAACTACCCTATCATCGTCTTTTCGTGC-AGCCACAATCAGCGGAT 819
Query 704 ACGAAACGGTTCCCCAA--AATGACGAGGAAGCATTGCTAAAAGCGGTGTCTCAACAGCC 761
| || || ||||| || ||| | |||||||| |||||| |||| ||||||||||||||
Sbjct 820 ATGAGACCGTTCC--AATGAATAATGAGGAAGCGTTGCTACAAGCAGTGTCTCAACAGCC 877
Query 762 TGTTTCCGTGGCGATAGAAGGGTCAGGATATGAGTTTATACACTACTCAGGCGGGATATT 821
|||||| |||| |||||||||| |||| | ||||| |||||||| || ||| ||||
Sbjct 878 TGTTTCTGTGGGGATAGAAGGGACAGGGGCCGCGTTTAGGCACTACTCGGGAGGGGTATT 937
Query 822 TAACGGAGAGTGTGGGACGCATTTGAATCATGCGGTTACGATTGTTGGTTATGGGGTGAG 881
|||||||| ||||||||| ||||| ||||||||||||| |||||||||||||| ||||
Sbjct 938 CAACGGAGAATGTGGGACGGATTTGCATCATGCGGTTACAATTGTTGGTTATGGAATGAG 997
Query 882 CGAAGAAGGGATTAAGTATTGGTTGTTGAAGAACTCGTGGGGAGAATCTTGGGGAGAAGA 941
|||||||||| |||||||||| || ||||||| || ||||| ||| ||||||||||| |
Sbjct 998 TGAAGAAGGGACTAAGTATTGGGTGGTGAAGAATTCTTGGGGGGAAACTTGGGGAGAAAA 1057
Query 942 TGGTTATATGAGAATCATGAGAGACGTAGATGCACCTCAAGGAATGTGTGGTTTGGCCAG 1001
|||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1058 TGGTTACATGAGGATCAAGAGAGACGTGGATGCACCCCAAGGAATGTGTGGTTTGGCCAT 1117
Query 1002 CCTTGCTTACTATCCAGTAGCTTGA 1026
||||||| ||||||| | ||||||
Sbjct 1118 TCTTGCTTTCTATCCACTTGCTTGA 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5