BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348153
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50440.1 | Symbols: ATMES10, MES10 | methyl esterase 10 | ch... 1304 0.0
> AT3G50440.1 | Symbols: ATMES10, MES10 | methyl esterase 10 |
chr3:18717311-18718494 REVERSE LENGTH=1007
Length=1007
Score = 1304 bits (706), Expect = 0.0
Identities = 760/787 (97%), Gaps = 0/787 (0%)
Strand=Plus/Plus
Query 6 GCAACAACAACAACTCCATCACTTCGTCTTTGTCCACGGCTCATGTCATGGAGCATGGTG 65
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCAGCAACAACAACTCCATCACTTCGTCTTTGTCCACGGCTCATGTCATGGAGCATGGTG 199
Query 66 CTGGTTCAAACTAGCTGCAAAGCTCAAGCTCGATGGTCACCGTGTGACAGCTATCGACCT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CTGGTTCAAACTAGCTGCAAAGCTCAAGCTCGATGGTCACCGTGTGACAGCTATCGACCT 259
Query 126 TGGTGGGTCCGGTGTCGACACGAGGCGGCTCGAAGAGGTTCGTTTGGTGTCGGAGTATCT 185
|||||| ||||||||||||||||||| |||| | ||||||||||||||||||| ||||||
Sbjct 260 TGGTGGCTCCGGTGTCGACACGAGGCAGCTCCATGAGGTTCGTTTGGTGTCGGCGTATCT 319
Query 186 AGAGCCTTTGATGAGTTTCATGGAGTCTCTTCCTGAAAACGAGAAAGTGGTTCTTGTTGG 245
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 320 AGAGCCTTTGATGAGTTTCATGGAGTCTCTCCCTGAAAACGAGAAAGTGGTTCTTGTTGG 379
Query 246 TCATAGCTATGGTGGCATTGGAACCTCTCTTGCTATGGAAAGGTTTCCGACCAAAGTCTC 305
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 380 TCATAGCTATGGTGGCATTGGAACTTCTCTTGCTATGGAAAGGTTTCCGACCAAAGTCTC 439
Query 306 TGTCGGAATCTTCCTCTCTGCTTACATGCCGCACCATGACTCTCCTCCAGCGGTTTTGAT 365
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 440 TGTCGGAATCTTCCTCTCTGCTTACATGCCGCACCATGACTCTCCTCCGGCGGTTTTGAT 499
Query 366 ACAAGAGTATTTTACGAGACTACCAGAGGGTTTCGCTATGGATTGTGAGTTTACATTCGA 425
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 500 TCAAGAGTATTTTACGAGACTACCAGAGGGTTTCGCTATGGACTGTGAGTTTACATTCGA 559
Query 426 GGAAGGACTAGAACATCCTCCAAGTTCAGTTTTGTTCGGTACTATTTTCTTGAAGGAGAA 485
||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 560 GGAAGGATTAGAACACCCACCAAGTTCAGTTTTGTTCGGTACTAGTTTCTTGAAGGAGAA 619
Query 486 GGCATATAGTAATTGCCAATTAGAGGATCTAGAATTAGCCATGGCGTTGGTGAAACCGAG 545
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 620 GGCATATAGTAATTGCCAGTTAGAGGATCTAGAATTAGCCATGGCGTTGATGAAACCAAG 679
Query 546 CTGGTTATACACTAAGGAAATGGGAGGTGAAGATTTGATAACAAAGGAGAGGTATGGATC 605
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 680 CTGGTTATACACTAAGGAAATGGGAGGTGAAGATCTGATAACAAAGGAGAGGTATGGATC 739
Query 606 TGGGAAGAGAGTGTTTATTGTTTGCGAAGGCGACAATGTGCTTCCGGAGGAGATTCAGAA 665
||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||
Sbjct 740 TGGGAAGAGAGTGTTTATTGTCTGTGAAGGCGACAATGTGGTTCCAGAGGAGATTCAGAA 799
Query 666 GTGGATGATTAGTAACTACGAGCCTCACGAGGTTAAGCGGATTGAAGAAGCTGGTCACAT 725
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 800 GTGGATGATTAGTAACTACGAGCCTCACGAAGTTAAGCGGATTGAAGAAGCTGGTCACAT 859
Query 726 GGCTATGCTCACTAAGCCTCATCAGCTTTCTCAACTGCTACAGGAAATAGCAGCGAAATA 785
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 860 GGCTATGCTCACTAAGCCTCATGAACTTTCTCAACTGCTACAAGAAATAGCAGCGAAATA 919
Query 786 TAACTAA 792
|||||||
Sbjct 920 TAACTAA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5