BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348440
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 2... 808 0.0
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 346 3e-94
> AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein
29 | chr3:19819236-19821519 REVERSE LENGTH=1599
Length=1599
Score = 808 bits (437), Expect = 0.0
Identities = 508/541 (94%), Gaps = 9/541 (2%)
Strand=Plus/Plus
Query 489 TGAATTTGAAGGCAGACCTTTGAGAGTCAATGCTGGCCCTCCTCCACCTAAAAGAGAGGA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGAATTTGAAGGCAGACCTTTGAGAGTCAATGCTGGCCCTCCTCCACCTAAAAGAGAGGA 707
Query 549 ATCCTTCTCCAGAGGACCAAGAAGTGGTGGTTATGGTTCTGAACGTGGTGGAGGCTACgg 608
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 708 ATCCTTCTCCAGAGGACCAAGAAGTGGAGGTTACGGTTCTGAGCGTGGTGGAGGTTACGG 767
Query 609 ttctgagcgtggtggtggttacggttctgagcgtggtggtggttatggttcagagcgtgg 668
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 768 TTCCGAGCGTGGTGGTGGTTATGGTTCCGAGCGTGGTGGTGGTTATGGTTCCGAGCGTGG 827
Query 669 tggtggATACGGGTCTCAGCGTAGTGGTGGT--T-ATGGAGGGTCTCAACGTTCCAGTTA 725
|||||||||||| ||||| |||||||||||| | | |||||||||||||||||||||||
Sbjct 828 TGGTGGATACGGTTCTCAACGTAGTGGTGGTGGTTACGGAGGGTCTCAACGTTCCAGTTA 887
Query 726 TGGTTCGGGGTCAGG-T----T-CGGGCTCAGGTTCAGGAAACCGTCTTTACGTGGGCAA 779
||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 888 TGGTTCGGGGTCAGGGTCCGGTTCGGGCTCAGGTTCAGGAAACCGTCTCTACGTGGGCAA 947
Query 780 CCTTTCTTGGGGTGTTGATGACATGGCCCTTGAGAACTTGTTTAATGAGCAAGGAAAGGT 839
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 948 CCTTTCTTGGGGTGTTGATGACATGGCACTTGAGAACTTGTTTAACGAGCAAGGAAAGGT 1007
Query 840 AGTTGAAGCCAGGGTTATCTACGACAGGGACAGCGGTAGATCCAAGGGTTTTGGGTTTGT 899
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1008 AGTTGAAGCTAGGGTTATCTACGACAGGGACAGCGGTAGATCCAAGGGTTTTGGATTTGT 1067
Query 900 GACACTCAGTTCTTCTCAAGAGGTTCAAAAGGCCATCAATTCCTTGAATGGTGCTGATTT 959
|||||| || ||||| ||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1068 GACACTTAGCTCTTCCCAAGAGGTTCAGAAGGCGATCAATTCCTTGAATGGAGCAGATTT 1127
Query 960 GGATGGAAGACAAATAAGAGTCTCGGAGGCTGAGGCTAGGCCACCAAGAGGCCAATTTTG 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1128 GGATGGAAGACAAATAAGAGTCTCAGAGGCTGAGGCTAGGCCACCAAGAGGCCAATTTTG 1187
Query 1020 A 1020
|
Sbjct 1188 A 1188
Score = 773 bits (418), Expect = 0.0
Identities = 466/490 (95%), Gaps = 0/490 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGCCTCTGCTTCTTCTCTTTCTGCTTTCAACCCTAAATCCCTTCCTCTCTGCGTC 60
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 97 ATGTCTGCCTCTGCTTCTTCCCTCTCTGCTTTCAATCCTAAATCCCTTCCTCTCTGCGTC 156
Query 61 TCCAGGCCAGCTTCCGTCTCCGTCTTACCTCCTTCCCTCTCCTTCAAACTTCATTCCGAC 120
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 157 TCCAGACCCGCTTCCGTCTCCGTCTTACCTCCTTCCCTCTCCTTCAAACTTCACTCCGAC 216
Query 121 CATCTCGTCTCTCTCTTCGCTTCCTCCGCCGTGAAATGCTCATCCCCCGCCGAGTATCCG 180
|| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 217 CACCTCGTCTCTATCTTCGCTTCCTCCGCCCTCAAATGCTCATCCCCCGCCGAGTACCCG 276
Query 181 TCGCGTTTTGTTAGAAACGTTGCTGTATCTTCAGATTTCGAGGTGGAGGAAGATGATATG 240
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 277 TCGCGTTTCGTTAGAAACGTTGCTGTATCTTCGGATTTTGAGGTGGAGGAAGATGATATG 336
Query 241 TTCGCTGACGGTGACGATTCGGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTCAAG 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 337 TTCGCTGACGGTGACGATTCAGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTTAAG 396
Query 301 CTCTTTGTTGGTAACCTTTCCTTTAACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 397 CTCTTTGTTGGTAACCTTTCTTTTAACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAG 456
Query 361 AGCGCCGGAAATGTTGAGATGGTTGAGGTAATCTATGACAAAGTGACTGGACGAAGCAGG 420
||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 457 AGCGCTGGAAATGTTGAGATGGTTGAGGTTATCTATGACAAAGTGACTGGCCGGAGCAGG 516
Query 421 GGTTTCGGATTTGTGACAATGTCTACCGCGGCAGAAGTTGAAGCAGCAGCTCAACAGTTC 480
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 517 GGTTTCGGATTTGTGACAATGTCAACCGCAGCGGAAGTTGAAGCAGCAGCTCAACAGTTC 576
Query 481 AATGGCTATG 490
||||||||||
Sbjct 577 AATGGCTATG 586
> AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634525-15636409 REVERSE LENGTH=1316
Length=1316
Score = 346 bits (187), Expect = 3e-94
Identities = 441/556 (79%), Gaps = 48/556 (9%)
Strand=Plus/Plus
Query 20 CTCTTTCTGCTTTCAACCCTAAATCCCTTCCTCTCTGCGTCTCCAGGCCAGCTTCCGTCT 79
|||| ||| | |||||||||||||| |||||| || |||||||||| || || ||||| |
Sbjct 104 CTCTCTCTTCCTTCAACCCTAAATCTCTTCCTTTCGGCGTCTCCAGACCTGCCTCCGTTT 163
Query 80 CCGTCTTACCTCCTTCCCTCTCCTTCAAACTTC-ATTCCGACCATCTCGTCTCTCTCTTC 138
|| ||||| |||||||||||||||| |||| || ||||||| | || ||| | || |||
Sbjct 164 CCCTCTTATCTCCTTCCCTCTCCTTTAAAC-TCAATTCCGA-C-TC-CGT-T-TC-CTT- 215
Query 139 GCTTCC-TCCGCCGTGAAAT-GCTCATCCCCCGCCGAGTATCCGTCGCGTTTTGTTAGAA 196
| ||| | ||||| |||| | | || |||| | | | | |||| || | | |
Sbjct 216 -C-TCCAT-CGCCGCCAAATGGAAC-TCTCCCG-C---T-T-C-TCGC--TTCGCCCGTA 262
Query 197 ACGTTGCTGTA-T-CTTCAGATTTCGAGGTGGAGGAAGATGATATGTTCGCTGACGGTGA 254
||||||| | | | | ||||| ||||||||||| ||||||| | ||||||||| ||
Sbjct 263 ACGTTGC-G-ATTACCTCAGAGTTCGAGGTGGAAGAAGATG--GT-TTCGCTGAC-GT-- 314
Query 255 CGATTCGGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTCAAGCTCTTTGTTGGTAA 314
|| || |||| |||| || || |||||| ||||||| || ||||| ||||||||
Sbjct 315 CG-CTC--CGCCAAAAGAGC--AA-TCTTTCTCTGCTGACCTTAAACTCTTCGTTGGTAA 368
Query 315 CCTTTCCTTT-AACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAGAGCGCCGGAAATG 373
|| ||||||| |||||||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 369 CC-TTCCTTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATG 427
Query 374 TTGAGATGGTTGAGGTAATCTATGACAAAGTGACTGGACGAAGCAGGGGTTTCGGATTTG 433
||||||||||||||||||||||||||||| | || ||| ||||||| ||||| ||||| |
Sbjct 428 TTGAGATGGTTGAGGTAATCTATGACAAAATTACAGGAAGAAGCAGAGGTTTTGGATTCG 487
Query 434 TGACAATGTCTACCGCGGCAGAAGTTGAAGCAGCAGCTCAACAGTTCAATGGCTATGAAT 493
|||| |||||| | | | |||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 488 TGACTATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTCAGCAGTTCAATGGCTATGAGT 547
Query 494 TTGAAGGCAGACCTTTGAGAGTCAATGCTGG-CCCTCCTCCACCTAAA-AGAGAGGAATC 551
| || || ||||||||||||||||||||||| ||| || ||||| ||| || || || |
Sbjct 548 TGGATGGTAGACCTTTGAGAGTCAATGCTGGTCCC-CCACCACC-AAAGAGGGAAGA-TG 604
Query 552 CTT-CTCCAGAGGACC 566
|| ||||||||||||
Sbjct 605 GTTTCTCCAGAGGACC 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5