BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348567
Length=2511
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54760.1 | Symbols: | dentin sialophosphoprotein-related | ... 2639 0.0
> AT3G54760.1 | Symbols: | dentin sialophosphoprotein-related
| chr3:20269080-20272457 REVERSE LENGTH=2908
Length=2908
Score = 2639 bits (1429), Expect = 0.0
Identities = 1893/2109 (90%), Gaps = 63/2109 (3%)
Strand=Plus/Plus
Query 304 ACTGAGATGGAGTGTGAAGGAGATACTGGAACTGTTGAGGTGAAGTTGAATGATGAAACG 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ACTGAGATTGAGTGTGAAGGAGATACTGGAACTGTTGAGGTGAAGTTGAATGATGAAACG 516
Query 364 GCTAAGTCTGAAGTTAAGAGTAACAA-TGGTGCTAGTCATGATGAAACTGCAGGAGAAGA 422
||||||||||||||||||||||| || |||||||| | | |||||||||||||||||||
Sbjct 517 GCTAAGTCTGAAGTTAAGAGTAA-AAGTGGTGCTA--C-TCATGAAACTGCAGGAGAAGA 572
Query 423 AGAGACTGTAATTTCTGCTGCAAATGAAGCTACTGATGAGAAGGCAAAATGTGAAGTTGA 482
||||||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 573 GGAGACTGAAAATTCTGTTGCGAATGAAGCTACTGATGAGAAGGCAACATGTGAAGTTGA 632
Query 483 AGATAACGGTGGTGCTTGTGATGCTGAACAAAATGTTGAAAGTGAAAAGTCCCAGCAAAA 542
|||||||||||||| ||||||||| |||||| ||||||||| |||||| | ||||| |||
Sbjct 633 AGATAACGGTGGTGTTTGTGATGCAGAACAAGATGTTGAAACTGAAAATTTCCAGCTAAA 692
Query 543 TACACTCCATGTTGAGACGCTTTCTGTTACAGAAAATAAAGTTGACCGAGAGAAGGAAAC 602
| || |||||| |||||||||||||||| ||||| |||||| ||||| ||||||||| ||
Sbjct 693 TCCAGTCCATGGTGAGACGCTTTCTGTTGCAGAAGATAAAGCTGACCAAGAGAAGGAGAC 752
Query 603 AACAAAGAAAAGAGAGAAGGATAATAACGAAATGGATGTTGATAGCAAACAGGAAAATGA 662
||||||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct 753 AACAAAGAAAATCGAGAAGGATATTAACGAAATGGAAGTTGATAGCAAACAGGAAGATGA 812
Query 663 AGAGAATGTTGCTCTTCATGAACAGGGAAATCATGAACATGCTAAGCATTCAGGATCTGC 722
|||||| || | | || | ||| ||||||||||||||| ||||||
Sbjct 813 AGAGAA---TG------A-G-AC--------C--GAAGATGCTAAGCATTCAGAATCTGC 851
Query 723 ACAGGTTCCAGAGGAGTCTACCCAACTGAGCAAAGAGGAAACAGATGaaaaaaaTCAGAA 782
|||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||
Sbjct 852 ACAGGTTCCAGAGGAGTCTACCAAATTGAGCAAAGAGGAAACAGACGAAGAAAATCAGAA 911
Query 783 AGAGGAAAACGGAGAAGCCATGGAAATTGATTGTGCGGCAGAGGAACAGGT-GATAAAGG 841
|||||||||||||| ||||||||||||||| ||| ||||| |||||| || || |||||
Sbjct 912 AGAGGAAAACGGAGTTGCCATGGAAATTGATGGTGTGGCAGGGGAACATGTGGA-AAAGG 970
Query 842 ATGCTAAAGTAGGCGGCGCTTTGGATAATGAC-TGCAATGAATCTGCTGGTGCAAGTATG 900
|| |||||||||| | | || |||||||| | |||||||||||||||||||||||||||
Sbjct 971 TTGTTAAAGTAGGCAGTGGTTCGGATAATG-CTTGCAATGAATCTGCTGGTGCAAGTATG 1029
Query 901 GTAAAAACCCAAGATATTCCAGTAGCTGAAGCTGACAACAATGTTTCCAATGTAGTTGAG 960
|| |||| |||||| ||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1030 GTTCAAACACAAGATGTTCCAATAGCTGAAGCTGACAACAATGAATCCAATGTAGTAAAG 1089
Query 961 AAAATGGAAACTGATGAACGCAAAGATAATGCTCATATGGCAAGTGATCTTACCGGAACA 1020
|||||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1090 AAAATGGAAATTGATGAACGCAAAGATAATGCTGATATGACAAGTGATCTTACGGGAACA 1149
Query 1021 ATTGAATCTGCTGATTCAGCTATCTCAAATAGTCCCACTGAAGATGCTGCTCCAGGTGAA 1080
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1150 ATTGAATCTGCTGATTCAGCAATCCCAAATAGTCCCACTGAAGATGCTGCTCCAGGTGAA 1209
Query 1081 GTTGAACCGTTGGATCATAATGCTCTTTTTGATCCAACTTCTGATATTACCAACTTTATT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GTTGAACCGTTGGATCATAATGCTCTTTTTGATCCAACTTCTGATATTACCAACTTTATT 1269
Query 1141 GATTTCAGTGGTGTATCATCTTGGTCAGGAAATATACAAGACCTTAAAACCGAAACCGGG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GATTTCAGTGGTGTATCATCTTGGTCAGGAAATATACAAGACCTTAAAACCGAAACCGGG 1329
Query 1201 AATGTATCTTTGAAAGATGATAAGAAAGCTACTGACCTGGCAGAGGATGTTGCCACAGCA 1260
||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |||||||
Sbjct 1330 AATGTATCTTTGAAAGAGGATAAGAAAGTTACTGACATGGCAGAGGACGTTGTCACAGCA 1389
Query 1261 GATGCTAATCTAAGCTTAAGTCCCGAAGGTATCGAATCTGAATTGAATGAAGCGCGTGTT 1320
||| | | | | || | | ||||| |||| ||| | | ||||||
Sbjct 1390 GAT---A-T--A-GA--AA--C-------T---GAATC-GAAT-GAA-GC--C-CGTGTT 1422
Query 1321 GGTGTTGGGGCAGAATCTCCAGCTGCTGCAACAGATTGTTCAAAAGAGACTTCTGATGCA 1380
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1423 GGTGTTGGGGCAGAATCTCCAGCTGCTGCAACTGATTGTTCAAAAGAGACTTCTGATGCA 1482
Query 1381 ACTTTGGGATCTGAAGAAAACCAACAAGATAAAGATCATCAATCCCTGGATAAGAAAATA 1440
|||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| |
Sbjct 1483 ACTTTGGGATCTGAAGAAAACCAACAAGATAAGGATCATCAATGCCTCGACAAGAAAACA 1542
Query 1441 GCAGATCAACAAGATACAATGATAGAGGAAGATGACATTACTCATGAAGCTCCAAGTATC 1500
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1543 GCAGATGTACAAGATACAATGATAGAGGAAGATGACATTACTCATGAAGCTCCAAGTTTC 1602
Query 1501 GATCCAAACCAAAAGGAAGATGCAGAAATGGAAGAAAATCCCAACAATTCTGATTATGCT 1560
|| ||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||
Sbjct 1603 GACCCAAACCAAAAGGAAAATGCAGAAATGGAAGAAAATCACAACAATTTTGTTTATGCT 1662
Query 1561 AATGATATAACC-GGTTTTGACATTAAAACCAATGGTGTGAAACGAAAGGCTGATGTCCT 1619
||||| || | |||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1663 GATGATG-AAGCTGGTTCTGATGTTAAGACCAATGGTGTGAAACGAAAGGCTGATGTCCT 1721
Query 1620 GAGTGAGGATTCACCAGGAGAAGGTAGGAAGACTGTTTCATTCGCGAAGGTGTCTTTCGC 1679
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1722 GAGTGAGGATTCACCAGGAGAAGGTAGGAAGACTGTTTCATTCGCCAAGGTGTCTTTTGC 1781
Query 1680 CGAAAGGCCGTCCTTTAAGATCGGTGCATGCATAGCCAGAGCTGCTAGTCAGATGGCAGG 1739
|||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1782 CGAAAGGCCGTCCTTTAAAATTGGTGCATGCATAGCCAGGGCTGCAAGTCAGATGGCAGG 1841
Query 1740 ATCTTCTTCAGTTTTGAAGGGTAGTAACTTTGGTGATGAAACTCTTTCTGTTGAGAGTTT 1799
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 ATCTCCTTCAGTTTTGAAGGGTAGTAACTTTGGTGATGAAACTCTTTCTGTTGAGAGTTT 1901
Query 1800 TGTATCCCAGCTTCACTGTGCAGCAACAGACCCTGTTAAAGAGAACGTTGTATCTGACAT 1859
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1902 TGTATCCCAGCTTCATTGCGCAGCCACAGACCCTGTTAAAGAGAACGTTGTATCTGACAT 1961
Query 1860 TGCTGCTGGCTTTTTCTTAGATTTCCGAAACTCATCGGCTTCACAGCAAGTTACCACGGA 1919
|||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||||
Sbjct 1962 TGCTACTGGCTTTTTCTTGGATTTCCGAAACTCATCAGCATCGCAGCAAGTTACCACGGA 2021
Query 1920 AAAGGTAAGCAAGAAAAGAGGTCGACCATCCAATTCTGATGTAGCAGGAACTGAATCATT 1979
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 2022 AAAGGTAAGCAAGAAAAGAGGTAGACCATCCAATTCTAATGTAGCAGGAACTGAAGCATT 2081
Query 1980 TGAGTTCGAGGAAACGGGCGACACATACTGGACTGACAGGGTGATCCATAATGGTGGTGA 2039
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2082 TGAGTTTGAGGAAATGGGCGACACATACTGGACTGACAGAGTGATCCATAATGGTGGTGA 2141
Query 2040 AGAGCAAACTCCACCTACTGAGAAAGG-AAATTATCAAGTTGTGCCAGTTGAGTTGAAAC 2098
|| |||||| || ||||||| ||||| |||||||||||| ||||| |||||||||||||
Sbjct 2142 AGGGCAAACACCGGCTACTGA-AAAGGGAAATTATCAAGTCGTGCCGGTTGAGTTGAAAC 2200
Query 2099 CTGCTCTGATTCAAAGGACTCGTCGACCATACAGAAGACGACAGGCTCAGATCAATATTC 2158
|||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| |||||
Sbjct 2201 CTGCTCAGGTTCAAAGGACTCGGCGACCATACAGAAGACGACAGTCTCAGATCAGTATTC 2260
Query 2159 ATCTTTCAGCCTC-AGACAAACCAGCAAACTTTGATGAGAATGCACCAGCTGAGCTTGTA 2217
|| ||||||| | | | ||||| ||| || ||||||||||||||||||||||| || ||
Sbjct 2261 CTCATTCAGCCACTA-AGAAACCGGCAGACATTGATGAGAATGCACCAGCTGAGATTATA 2319
Query 2218 ATGAACTTTTCTGAAGCGGATACAATACCTCCTGAGAAGAGCCTGAGTAAAATGTTTAGG 2277
|||||||||| |||| | ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2320 ATGAACTTTTTTGAAACTGATACAATACCTCCTGAGAAGAGTCTGAGTAAAATGTTCAGA 2379
Query 2278 CATTTTGGACCAATAAAGGAGTCACAGACTGAAGTTGACAAGGAGAATAACCGGGCTAGA 2337
|||||||| || ||| |||||| | |||||||||||||| |||||| |||||||||||
Sbjct 2380 CATTTTGGCCCTATACAGGAGTTGCGGACTGAAGTTGACAGGGAGAAAAACCGGGCTAGG 2439
Query 2338 GTAGTTTATAAGAAGGGTGCTGATGCTGAGGTTGCTTACAACAGTGCAGGAAGGTTCAGT 2397
||||||| || ||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 2440 GTAGTTTTTAGGAAGGGTGCTGATGCGGAGGTTGCTTACAATAGCGCAGGAAGGTTCAAC 2499
Query 2398 ATTTTTGGG 2406
|| ||||||
Sbjct 2500 ATATTTGGG 2508
Score = 143 bits (77), Expect = 9e-33
Identities = 104/117 (89%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAACAGAGAGAGGAAAGTGAGTTTCTTGGTGATTTTAGAGAGCCCATGAAGGAA 60
|||||||||| |||||||||||||||| | || |||||| || ||||||||| |||||
Sbjct 241 ATGGAGGAACCGAGAGAGGAAAGTGAGGCTGTTCGTGATTGCAGTGAGCCCATGGAGGAA 300
Query 61 GTTGGTAAGGGACT-AGGTTTATCTTCTAAAACTGAAACCCTAGTTGGTGAGGATGC 116
| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GCTGGTAAGGGA-TCAGGTTTATCTTCTAAAACTGAAACCCTAGTTGATGAGGATGC 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124614686412
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5