BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg348799
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57240.1 | Symbols: BG3 | beta-1,3-glucanase 3 | chr3:211817... 1447 0.0
AT3G57260.1 | Symbols: BGL2, PR2, BG2, PR-2 | beta-1,3-glucanas... 449 2e-125
> AT3G57240.1 | Symbols: BG3 | beta-1,3-glucanase 3 | chr3:21181742-21183075
REVERSE LENGTH=1230
Length=1230
Score = 1447 bits (783), Expect = 0.0
Identities = 903/961 (94%), Gaps = 7/961 (1%)
Strand=Plus/Plus
Query 2 TGGCTTCCTTCTTCGACACGGCAGTTGGGCAAATCGGAGTGTGCTACGGGAGAAATGGAA 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 101 TGGCTTCCTTCTTCGACACGGCAGTTGGACAAATCGGAGTGTGCTACGGGAGAAATGGAA 160
Query 62 ACAACCTGCGTCCTGCGTCGGAAGTCGTGGCTCTTTACCAACAACGGAACATCCGGCGGA 121
|||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 161 ACAACCTGCGACCCGCGTCCGAAGTCGTGGCGCTTTACCAACAACGGAACATCCGGCGGA 220
Query 122 TGCGGCTGTACGGTCCCAACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCGAGC 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TGCGGCTGTACGATCCCAACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCGAGC 280
Query 182 TCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTATTGCTTCCAGCCAAGCGGAAGCCG 241
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 281 TCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTCTCGCCTCCAGCCAAGCGGAAGCCG 340
Query 242 ACACGTGGGTCAGCAACAACGTCCGTAACTATGCAAACGGTGTCAGATTCCGCTACATCT 301
|||| |||||| ||||||||||||| |||||||||||| |||| ||| ||||||||||
Sbjct 341 ACACATGGGTCCGCAACAACGTCCGCAACTATGCAAAC---GTCACATTTCGCTACATCT 397
Query 302 CTGTCGGGAACGAGGTACAACCCTCAGACCAAGCCGCGAGGTTTGTCCTCCCCGCGATGC 361
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 398 CTGTCGGGAACGAGGTACAGCCCTCAGACCAAGCTGCGAGCTTTGTCCTCCCCGCGATGC 457
Query 362 AGAACATAGAGAGAGCAGTTTCAAGCCTCGGGATCAAGGTCTCGACGGCTATAGACACCA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AGAACATAGAGAGAGCAGTTTCAAGCCTCGGGATCAAGGTCTCGACGGCTATAGACACCA 517
Query 422 GAGGAATTTCCGGGTTTCCACCGTCAAGTGGGACGTTCACACCGGAATTTAGGAACTTTA 481
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 518 GAGGCATTTCCGGGTTTCCGCCGTCAAGTGGGACGTTCACACCGGAGTTTAGGAGCTTTA 577
Query 482 TCGCACCGGTGATAGGTTTCTTGGCGAGCAAGCAATCTCCTCTGCTCGTGAATC-TCTAC 540
|||||||||||||| |||||||| | ||||||||||||||||||||||||||| | |||
Sbjct 578 TCGCACCGGTGATAAGTTTCTTGTCAAGCAAGCAATCTCCTCTGCTCGTGAATAAT-TAC 636
Query 541 CCTTACTTCAGCTATACAGGAAACATGAGAGACATCCGTTTAGACTACACTCTGTTCACC 600
|||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 637 CCTTACTTCAGCTACACGGGAAACATGCGAGACATCCGGTTAGACTACACTCTGTTCACC 696
Query 601 GCACCATCCACTGTAGTCAATGACGGACAAAACCAATACCGAAATCTCTTCTATGCAATC 660
||||| || ||||||||||||||||||||||||||||| ||||| || ||| | ||||||
Sbjct 697 GCACCGTCAACTGTAGTCAATGACGGACAAAACCAATATCGAAACCTATTCCACGCAATC 756
Query 661 TTAGACACTGTTTACGCATCATTAGAGAAAGCTGGAGGTGGATCAGT-GGAGATCGTGGT 719
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 757 TTAGACACTGTTTACGCATCATTAGAGAAAGCTGGAGGTGGTTC-GTTGGAGATCGTGGT 815
Query 720 GTCCGAGAGTGGTTGGCCGACAGCTGGAGGAGCCGCGACGAGTGTGGAGAATGCGAGGAC 779
|||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||| ||
Sbjct 816 GTCCGAGAGTGGTTGGCCGACAGCGGGAGGAGCAGCGACGGGTGTGGATAATGCGAGAAC 875
Query 780 TTATGTGAACAATTTGATACAAACTGTGAAAAATGGATCTCCGAGAAGGCCAGGGAGAGC 839
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 876 TTATGTGAACAATTTGATACAAACTGTGAAAAATGGATCTCCGAGGAGACCAGGGAGAGC 935
Query 840 TATAGAGACTTATATATTTGCTATGTTCGATGAGAATTTGAAGCAAGGTCCCGAGATTGA 899
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 936 TACAGAGACTTATATATTTGCTATGTTCGATGAGAATTCGAAGCAGGGTCCCGAGACTGA 995
Query 900 GAAGTTTTGGGGACTTTTTCTTCCGAATCTACAGCCTAAGTATGGTGTCAATTTCAACTA 959
||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 996 GAAGTTTTGGGGACTGTTTCTTCCAAATCTACAGCCTAAGTATGTTGTCAATTTCAACTA 1055
Query 960 A 960
|
Sbjct 1056 A 1056
> AT3G57260.1 | Symbols: BGL2, PR2, BG2, PR-2 | beta-1,3-glucanase
2 | chr3:21188517-21189859 REVERSE LENGTH=1249
Length=1249
Score = 449 bits (243), Expect = 2e-125
Identities = 758/996 (76%), Gaps = 78/996 (8%)
Strand=Plus/Plus
Query 4 GCTTCCTTCTTCGA-CACGGCAGTTGGGCAAATCGGAGTGTGCTACGGGA-GAAATGGAA 61
|||||||||||| | ||| ||| ||| ||||||||||| |||||||||| | | ||
Sbjct 101 GCTTCCTTCTTCAACCAC-ACAGCTGGACAAATCGGAGTATGCTACGGGATGCTA-GGCG 158
Query 62 ACAACC-TGCGTCCTGCGTCGGAAGTCGTGGCTCTTTACCAACAACGGAACATCCGGCGG 120
| ||| ||| | | ||||| || |||||||||||| |||||| ||||||| |||
Sbjct 159 A-TACCTTGCCAAGTCCATCGGACGTTGTGGCTCTTTACAAACAACAAAACATCCAGCGA 217
Query 121 ATGCGGCTGTACGGTCCC--AACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCG 178
|||||||| ||||| ||| | ||||| | |||| ||||||||| ||||| | ||||
Sbjct 218 ATGCGGCTCTACGG-CCCTGACCCAGGCG-CTCTTGCCGCTCTCCGTGGCTCTGACATCG 275
Query 179 AGCTCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTATTGCTTCCAGCCAAGCGGAAG 238
||||| | ||||| ||||| | | ||||| | ||| | || ||||| ||| |||| |
Sbjct 276 AGCTCATCCTCGACGTTCCCAGTTCAGATCTTGAACGTCTCGCCTCCAGTCAAACGGAGG 335
Query 239 CCGACACGTGGG-TC-AGCAACAACG-TCCGTAACTATGCA-A-ACGGTGTCAGATTCCG 293
|||||| ||||| || || || |||| || | | ||| || | | ||||||||||||||
Sbjct 336 CCGACAAGTGGGTTCAAG-AA-AACGTTCAG-AGCTA--CAGAGATGGTGTCAGATTCCG 390
Query 294 CTACATC-TCTGTCGGGAACGAGGT-ACAACCCTCAGACCAAGCCGCGAGGTTTGTCCTC 351
|||||| | || || || ||||| | ||||||||| | | | ||||| || |
Sbjct 391 GTACATCAAC-GTTGGAAATGAGGTGA-AACCCTCAG---TTG--G-GGGGTTTCTCTTA 442
Query 352 CCCGCGATGCAGAACATAGAGAGA-GCAGTTTC---A--A-GCCTCGGGA-TCAAGGTCT 403
| || ||||||||||| |||| | || ||||| | | | || | | |||||||||
Sbjct 443 CAAGCAATGCAGAACATCGAGA-ACGCGGTTTCTGGAGCAGGGCT-TGAAGTCAAGGTCT 500
Query 404 CGACGGCTATAGACAC---CA-GAGGAAT-TTCCGGGTTTCCACCG--TCAAGTGGGACG 456
| || ||||||| ||| || | | | | | || ||| ||| |||| || | |
Sbjct 501 CAACAGCTATAGCCACTGACACCACCACTGATAC--GTCTCCTCCGTCTCAA--GGAAGG 556
Query 457 TTCACACCGGAATTTAGGAACTTTATCGCACCGGTGATAGGTTTCTTGGCGAGCAAGCAA 516
|||| || | || || |||| ||| ||| ||||||||||||||||| |||||||||
Sbjct 557 TTCAGGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTGGCAAGCAAGCAA 616
Query 517 TCT-CCTCTGCTCGTGAATCTCTACCCTTACTTCAGCTATACAGGAAACATGAGAGA-CA 574
||| ||| ||||||||||||||||||||||||||||||| | ||| ||| | | | ||
Sbjct 617 TCTCCCT-TGCTCGTGAATCTCTACCCTTACTTCAGCTACATGGGAGACACG-GCCAACA 674
Query 575 TCCGTTTAGACTACACTCTGTTCACCGCACCA-TCCACTGTAG-TCAATGA-CGGACAAA 631
||| | |||||||| ||||||||||||| ||| |||||||| | | || || | |
Sbjct 675 TCCATCTAGACTACGCTCTGTTCACCGC-CCAGTCCACTGTTGAT-AACGATCC-AGGGT 731
Query 632 AC-CAATACCGAAATCTCTTCTATGCAA-TCTTAGACACTGTTTACGCATCATTAGAGAA 689
|| || |||| ||| || ||| | |||| ||| ||| | ||||| ||| |||| |||||
Sbjct 732 ACTCA-TACCAAAACCTATTCGACGCAAATCTC-GACTCGGTTTATGCAGCATTGGAGAA 789
Query 690 AGCTGGAGGTGGATCAGT-GGAGATCGTGGTGTCCGAGAGTGGTTGGCCGACAGCTGGAG 748
| | || || ||||| || ||| ||||||||||| |||| |||||||| |||| ||||
Sbjct 790 ATCAGGGGGCGGATC-GTTGGAAATCGTGGTGTCGGAGACCGGTTGGCCCACAGAGGGAG 848
Query 749 GAGCCGCGACGAGTGTGGAGAATGCGAGGACTTATGTGAACAATTTGATACAA-ACTGTG 807
|| || |||||||||||| || || | ||||||||| ||||||||||||||| | ||||
Sbjct 849 CAGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAACA-TGTG 907
Query 808 AAAAATGGATCTCCGAGAAGGCCAGGGAGAGCTATAGAGACTTATATATTTGCTATGTTC 867
|| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 908 AAGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAGACTTATATATTCGCTATGTTC 967
Query 868 GATGAGAATTTGAAGCAAGGTCCCGA-G-ATTGAGAAGTTTTGGGGACTTTTTCTTCC-G 924
||||||||| ||| |||| || | | || ||||||||||||||||| |||| ||| |
Sbjct 968 GATGAGAAT---AAG-AAGGAACCAACGTAT-GAGAAGTTTTGGGGACTGTTTCATCCAG 1022
Query 925 AATCTACAGCCTAAGTATGGTGTCAATTTCAACTAA 960
| || |||| ||||||||| || ||||||||||||
Sbjct 1023 A-TCGACAGTCTAAGTATGAAGTTAATTTCAACTAA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5