BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349486
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01200.1 | Symbols: | Duplicated homeodomain-like superfami... 1232 0.0
AT2G38090.1 | Symbols: | Duplicated homeodomain-like superfami... 193 3e-48
AT5G58900.1 | Symbols: | Homeodomain-like transcriptional regu... 167 2e-40
> AT5G01200.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:77116-78543 FORWARD LENGTH=1053
Length=1053
Score = 1232 bits (667), Expect = 0.0
Identities = 762/806 (95%), Gaps = 13/806 (2%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCGATGATGTACAGAGGAGTTGATATGTTTTCACCGG-AGAACACAAACTG 59
||||| ||||||| |||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 1 ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCA-AACACAAACTG 59
Query 60 GATTTTTCAAGAAGTCAGAGAAGCCACATGGACGACGGAGGAGAACAAACGGTTCGAGAA 119
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 60 GATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGGAGAACAAACGGTTCGAGAA 119
Query 120 AGCTCTCGCTTATCTCGACGACAAAGACAATCTTGAGAGCTGG-CGCAAGATCGCCGCTT 178
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| | ||
Sbjct 120 AGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTC-CAAGATCGCAGATT 178
Query 179 TGATTCCCGGAAAAACAGTAGCTGACGTCATTAAACGATACAAGGAGCTAGAGGATGATG 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGATTCCCGGCAAAACAGTAGCTGACGTCATTAAACGATACAAGGAGCTAGAGGATGATG 238
Query 239 TCAGCGACATCGAAGCCGGACTTATCCCCATTCCTGGCTACGGCGGCGACGCCTCCTCCG 298
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 239 TCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCG 298
Query 299 CTGCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCG 358
Query 359 TAGGAGGAAAGAGGAGTTCGCCGGCGATGAGTGATTGTTTTAGGCCTCCGATGCCGGAAA 418
| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 359 TTGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTAGGTCTCCGATGCCGGAAA 418
Query 419 AGGAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTACTATTTCTAATGGGTT 478
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 419 AGGAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTT 478
Query 479 TGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAAAAGCTTTGTGAAGACTCGGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 479 TGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAA 538
Query 539 CGCCGACGCAAGTCGCTTCACACGCTCAAAAATATTTTCTTCGACAACTCACAGATGGTA 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTA 598
Query 599 AAGACAAAAGACGATCAAGCATTCACGATATCACCACCGTTAACATCCCTGAGGCAGAAG 658
||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
Sbjct 599 AAGACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACG 658
Query 659 CAACCACAACCGCT--G-CCGC--A---A-CACTCTCTCCTACACCAGCCAATTCTTTTG 709
|| || ||||||| | |||| | | ||||||||||||| ||||||||||||||||
Sbjct 659 CATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTACTCCAGCCAATTCTTTTG 718
Query 710 ACGTTTTCCTTCAGCCAAATCCTCATCACAGTTTCGCGTCTGCGTCTGAGTCTTGCTATT 769
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 719 ACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATT 778
Query 770 ATAATGCGTTTCCGCAGTGGAGTTAA 795
||||||||||||||||||||||||||
Sbjct 779 ATAATGCGTTTCCGCAGTGGAGTTAA 804
> AT2G38090.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr2:15944711-15947085 FORWARD LENGTH=1774
Length=1774
Score = 193 bits (104), Expect = 3e-48
Identities = 189/230 (82%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 421 GAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTACTATTTCTAATGGGTTTG 480
|||||||||||||| ||||| ||||| || || |||||| || |||||| |||||||||
Sbjct 973 GAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTG 1032
Query 481 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTTTGTGAAGACTCGGAC 539
||||||||||||||||||||||||||||||||||| || |||||||| || | ||
Sbjct 1033 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAA-CTTTGTGACCACAAGAAC 1091
Query 540 GCCGACGCAAGTCGCTTCACACGCTCAAAAATATTTTCTT-CGACAACTCACA-GATGGT 597
||| ||||||||||| ||||||||||| ||||| | | || ||| ||| | | |||
Sbjct 1092 GCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTT-CATACGGCAAGTCA-ATGGTGGC 1149
Query 598 AAAGACAAAAGACGATCAAGCATTCACGATATCACCACCGTTAACATCCC 647
||||||||| | || |||||||| || |||||||| ||||| ||||||||
Sbjct 1150 AAAGACAAACGCCGTTCAAGCATCCATGATATCACAACCGTCAACATCCC 1199
> AT5G58900.1 | Symbols: | Homeodomain-like transcriptional regulator
| chr5:23783123-23785334 REVERSE LENGTH=1686
Length=1686
Score = 167 bits (90), Expect = 2e-40
Identities = 190/237 (80%), Gaps = 11/237 (5%)
Strand=Plus/Plus
Query 408 GAT-GCCGGAAAAGGAGAGGAAGAAAGGAGTTCCGTGGACTGAGGACGAACACCTA-CTA 465
||| |||||| |||| |||||||||| ||||| ||||| ||||| ||||| | | |||
Sbjct 1059 GATCGCCGGAGCTGGAGCGGAAGAAAGGCGTTCCTTGGACGGAGGAAGAACA-CAAGCTA 1117
Query 466 TTTCTAATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTT 524
|||||||||||||||||||||||||| ||||||||||||||||||||| | || |||
Sbjct 1118 TTTCTAATGGGTTTGAAGAAATATGGGAAAGGAGATTGGAGAAACATATCTCGGAA-CTT 1176
Query 525 TGTGA-AGACTCGGACGCCGACGCAAGTCGCTT-CACACGCTCAAAAATATTTTCTTC-G 581
||||| | || || ||||| || ||||| ||| | ||||| ||||| || || | || |
Sbjct 1177 TGTGATA-ACGCGAACGCCAACACAAGTAGCTAGC-CACGCCCAAAAGTACTT-CATCCG 1233
Query 582 ACAACTCACAGATGGTAAAGACAAAAGACGATCAAGCATTCACGATATCACCACCGT 638
||||| | | || || ||||| |||||| ||||||||||||| || ||||||||
Sbjct 1234 GCAACTTTCCGGCGGCAAGGACAAGAGACGAGCAAGCATTCACGACATAACCACCGT 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5