BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349529
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02270.2 | Symbols: NAP9 | non-intrinsic ABC protein 9 | chr... 876 0.0
> AT5G02270.2 | Symbols: NAP9 | non-intrinsic ABC protein 9 | chr5:467180-469110
REVERSE LENGTH=1223
Length=1223
Score = 876 bits (474), Expect = 0.0
Identities = 529/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 433 GTGTTGGATATCGATATCTCATGGAGATTGCACAAGGTATCGGATGGCCAGAGAAGACGT 492
|||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 580 GTGTTGGATATCGACATCTCATGGAGACTGCACAAGGTATCCGATGGCCAAAGAAGACGT 639
Query 493 GTTCAGATTTGTATGGGACTCCTCAAGCCATTTAAGGTTCTCCTTTTGGATGAAATAACT 552
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 640 GTACAGATCTGTATGGGACTCCTGAAGCCATTCAAGGTTCTCCTTTTGGATGAAATAACT 699
Query 553 GTTGATCTTGACGTTCTCGCAAGAGCAGACCTTCTGAAATTTCTGAGAAAGGAATGCGAA 612
|||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||
Sbjct 700 GTTGATCTTGACGTTCTCGCTAGAGCAGACCTTTTGAAGTTTCTGAGAAAGGAATGTGAA 759
Query 613 GAACGAGGAGCAACCATAATATACGCTACTCATATATTTGATGGTC-TAGAGGATTGGCC 671
|||||||||||||||||||| ||||||||||||||||| ||||| | ||||||| |||||
Sbjct 760 GAACGAGGAGCAACCATAATCTACGCTACTCATATATTCGATGG-CTTAGAGGACTGGCC 818
Query 672 AACACACATTGTGTATGTTGCAAACGGGAAACTGCAATTAGCATTGCCAATGGAGAAAGT 731
|||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||
Sbjct 819 AACACACATTGTGTATGTAGCAAACGGAAAATTGCAGTTAGCATTGCCAATGGAGAAAGT 878
Query 732 GAAGGAGACAAGCAAGAAGTCATTGAtgagaacagttgagagttggctgaggaaagaaag 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GAAGGAGACAAGCAAGAAGTCATTGATGAGAACAGTTGAGAGTTGGCTGAGGAAAGAAAG 938
Query 792 agatgaagagagaaagagaaggaaagagaggaaagCAAATGGGCTTCCGGAGTTTGAAAC 851
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 939 AGATGAAGAGAGAAAGAGAAGGAAAGAGAGGAAAGCTAATGGGCTTCCAGAGTTTGAAAC 998
Query 852 ACGGACTGAAGAAAGCCGTGTGACCGGTGATCCAGCACGGATGCTGAACAATGGCTGGGC 911
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 999 ACGGACTGAAGAAAGCCGTGTGACTGGTGATCCAGCACGGATGCTGAACAATGGCTGGGC 1058
Query 912 CGCCGGGAGACTCCACTCTACGGTTGCAGGCGGTGAGGATAATTTCGTCTTAAGCTCAAA 971
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1059 TGCCGGGAGACTTCACTCTACGGTTGCAGGTGGTGAGGATAATTTCGTCTTAAGCTCAAA 1118
Query 972 CAGAGTTCTAAGATAA 987
||||||||||||||||
Sbjct 1119 CAGAGTTCTAAGATAA 1134
Score = 776 bits (420), Expect = 0.0
Identities = 428/432 (99%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGT 129
Query 61 TTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGAT 189
Query 121 TTCTCAATCACGCTTAATTCGAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTCTCAATCACGCTTAATTCCAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGG 249
Query 181 AAAACGACGATTCTGAAGATACTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGG 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 250 AAAACGACGATTCTGAAGATATTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGG 309
Query 241 GTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACATCTTCTGGTGATCTCTGTTAT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 310 GTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACCTCTTCTGGTGATCTCTGTTAT 369
Query 301 CTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAGGTTCCGATACAAATG 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 370 CTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAAGTTCCGATACAAATG 429
Query 361 GACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGAT 489
Query 421 GAGTTGATCAAG 432
||||||||||||
Sbjct 490 GAGTTGATCAAG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5