BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349540
Length=2721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02430.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4407 0.0
> AT5G02430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:526592-529839 FORWARD LENGTH=2718
Length=2718
Score = 4407 bits (2386), Expect = 0.0
Identities = 2615/2726 (96%), Gaps = 13/2726 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGAACGGAAGAAGACGATGACGATGAAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGATCGGAAGAAGACGATGACGATGAAT 60
Query 61 TGGGCGGGGTTAGGCGAGGTTGAAGACGACGACGATCATTTTTTCGATAGCTCTAATCGA 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGCGGGGTTAGGCGAGTTTGAAGACGACGACGATCATTTTTTCGATAGCTCTAATCGT 120
Query 121 ATCTCCACCGTTGTGCCTTTGGATTTAGCATCATCTTCAGATGAGGAAGAAGGTGAGTTT 180
||||||||||| || |||| |||||||||||||||||| || || |||||||||||||||
Sbjct 121 ATCTCCACCGTCGTACCTTCGGATTTAGCATCATCTTCTGACGAAGAAGAAGGTGAGTTT 180
Query 181 GATGATTGCCGGATCTCGTTTTCTTCTAATGTATCGTCCTCCTCTCGCGCTGCTCCTGCG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GATGATTGCCGGATCTCGTTTTCTTCTAATGTGTCGTCCTCCTCTCGCGCTGCTCCTGCG 240
Query 241 CCGGATATGTCGCCGGATTATGATATTTGGATGTCGGCGCCGGGATCTATCACGGAGCGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGATATGTCGCCGGATTATGATATTTGGATGTCGGCGCCGGGATCTATCACGGAGCGT 300
Query 301 CGTCGTCGGCTTCTTAATGGAATGGGACTTGAATCTAAGAAGACTATGCTTGGAGCTATC 360
||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 301 CGTCGAAGGCTTCTTAATGGAATGGGACTTGAATCTAAGAAGACTAGGCTCGGAGCTATC 360
Query 361 TCGATTCAACGCGTGAGTGAACCTGTGGCGGTGGCGGGTGTGTGCTCTGGTTCTCGCGTT 420
||||||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||
Sbjct 361 TCGATTCAACGCGTGAGTGAACCTGTGGCGGCGACGGGTGAGTGCTCAGGTTCTCGCGTT 420
Query 421 GCGGAAGCGAAGGTGGAGGAGTCAGATCACAATTCTCCGGTGAATCAACGAGTTCATCGA 480
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 421 GCGGAAGTGAAGGTGGAGGAGTCAGATCACAATTCTCCGGTGAATCAAAGAGTTCGTCGA 480
Query 481 TCTTCATCGATGTCGGTTTTGCTTGTACGGTCTAGATCTGATTCTGATATCGAAGCGTCT 540
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCTCCGTCGATGTCGGTTTTGCTTGTACGGTCTAGATCTGATTCCGATATCGAAGCGTCT 540
Query 541 TCTGCTGAGAAAAAGAGGAAGGAAGAGATGTTAGGGAAAACTTCGAAATCGCGATTAACT 600
|||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 541 TCTGCTGAGAAACAGAGGAAAGAAGAGATGTTAGGGAAAACGTCGAAATCGCGATTGACT 600
Query 601 AGAACCGCGTCTGCGATTGGAGCTCCGTGTGCGAGAATTTGTCCCTACTTCACCCAAACG 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 AGAACCGCGTCTGCGATTGGAGCTCCGTGTGCGAGGATTTGTCCCTACTTCACCCAAACG 660
Query 661 CAAGCCTCGCCGCCGGACGCACCAAACGG---TCATCAGTCTCAAGGCCAACGTAGTGGT 717
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CAAGCCTCGCCGCCGGACGCACCAAACGGTCATCATCAGTCTCAAGGCCAACGTAGTGGT 720
Query 718 GCGTTGCTCTCTTCGGTAGTTTCCAATACTCGTTTTAGTGCTTTTTTCTTGATCAAGAAT 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 CCGTTGCTCTCTTCGGTAGTTTCCAATACTCGTTTTAGTGCTTTTTTCTTGATTAAGAAC 780
Query 778 CTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTGAGAATGGAATGTGGAATCGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTGAGAATGGAATGTGGAATCGG 840
Query 838 CTTAGTGATTTGCAAACTGGTAAGCAATTGACAATGGAAGAATTTGAGAAAAGTGTTGGC 897
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 CTTAGCGATTTGCAAACTGGTAAGCAATTGACAATGGAAGAATTTGAGAAGAGTGTTGGT 900
Query 898 TATTCATCTGTTGTTAAGGATCTTATGAGACGAGAGAACGCGAATTCGACGATAGATTTT 957
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 901 TATTCATCTGTTGTTAAGGATCTTATGAGAAGAGAGAACGCGAATTCGACGATGGATTTT 960
Query 958 AGGAAATTCAATTCGTATGTGTCAAAGAGTTTGAGAGTAAGTAAGAAGAGAGGAGCTGCT 1017
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGGAAATTTAACTCGTATGTGTCAAAGAGTTTGAGAGTAAGTAAGAAGAGAGGAGCTGCT 1020
Query 1018 TTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTAAGGTTTCAGAGAAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTAAGGTTTCAGAGAAA 1080
Query 1078 GAGAAGGATTCAACTGGTAGTGGTACAAGTAGTCCAAAAGTAGTGGAGAAGAACAATGAG 1137
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1081 GAGAAGGATTCAACTGGTAGTGGCACAAGTAGTCCAAAAGTAGCGGAGAAGAACAATGAG 1140
Query 1138 CAGGCAAATCAATGGGTGAAAGTGAGGCATTCAGGGAAGTCTCATAAAGATTTAAGTGCT 1197
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAGGCGAATCAATGGGTGAAAGTGAGGCATTCAGGGAAGTCTCATAAAGATTTAAGTGCT 1200
Query 1198 TTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAGGTATTTGGACTATGAAATTTAGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAGGTATTTGGACTATGAAATTTAGT 1260
Query 1258 CCAGATTCACATTTATTAGCAAGTGCAGGGGAGGATTGTGCAATCCATGTGTGGGAGGTT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCAGATTCACATTTATTAGCAAGTGCAGGGGAGGATTGTGCAATCCATGTGTGGGAGGTT 1320
Query 1318 CAAGAATGTGAAATCATGTCAATGAGTGAAGGGAGCTTGACACCGATTCATCCTTCAATG 1377
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1321 CAAGAATGTGAAATCATGTCAATGAATGAAGGGAGCTTGACACCTATTCATCCTTCAATG 1380
Query 1378 TCTGGTTCCACGGATAAATCGTCTACGGAAGGTGATGCTGCAGAAGTGTCACAGGATAAG 1437
||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1381 TCTGGTTCCACAGATAAATCGTC---GGAAGGTGATGCTGCAGAAGTGTCACAAGATAAG 1437
Query 1438 AAGAAAAAAGGGAAAACTTCAACGAGTAAAAAAGGAAACCAGATACCAGATTATGTCCAC 1497
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAGAAGAAAGGGAAAACTTCAATGAGTAAAAAAGGAAACCAGATACCAGATTATGTCCAC 1497
Query 1498 GCGCCTGAAACTGTGTTCTCATTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTG 1557
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCGCCTGAAACTGTGTTCTCCTTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTG 1557
Query 1558 GATGATGTTCTGGACTTATCCTGGTCTCGGTCACAGCTATTGCTTTCATCTTCCATGGAC 1617
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GATGATGTTCTGGACTTATCTTGGTCTCGGTCACAGCTATTGCTTTCATCTTCCATGGAC 1617
Query 1618 AAAACTGTGCGGTTGTGGGATATTGAAACTCAAAGTTGTCTAAAACTATTTGCCCACAAT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAAACTGTGCGGTTGTGGGATATTGAAACTCAAAGTTGTCTAAAACTATTTGCCCACAAT 1677
Query 1678 GACTATGTTACTTGTGTACAATTCAATCCACTGGATGAAGATTACTTCATCAGTGGCTCC 1737
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1678 GACTATGTTACTTGTGTACAATTCAATCCATTGGATGAAGATTACTTCATTAGTGGCTCC 1737
Query 1738 CTTGATGCCAAGATCCGTATATGGAACATATCAAACCGTCAAGTCGTTGAGTGGAATGAT 1797
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1738 CTTGATGCCAAGATCCGTATATGGAACATATCAAACCGTCAAGTAGTTGAGTGGAATGAT 1797
Query 1798 CTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTGTTGGT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTGTTGGT 1857
Query 1858 TCAATTAATGGGAATTGCCGGCTTTACAGTGCAGAGGATTGCAAGTTGGAACAAACAAAC 1917
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TCAATTAATGGGCATTGCCGGCTTTACAGTGCAGAGGATTGCAAGTTGGAACAAACAAAC 1917
Query 1918 CAGATAGATCTGCAAAACAAAAAGAAAGCTCAAGCTAAAAAGATCACAGCCTTCCAGTTT 1977
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1918 CAGATAGATCTGCAGAACAAAAAGAAGGCTCAAGCTAAAAAGATCACAGCTTTTCAGTTT 1977
Query 1978 TCTCCAATTAATCCATCAGAAGTGCTTGTAACTTCCGCTGATTCACGCATTCGGATTCTC 2037
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1978 TCGCCAATTAATCCATCAGAAGTGCTTGTAACTTCTGCTGATTCACGCATTCGGGTTCTT 2037
Query 2038 GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATTAACAGCCAAATGACA 2097
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2038 GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATGAACAGCCAAATGACA 2097
Query 2098 GCATCTTACACAGTAGATGCTAAGCACATTGTCTGTGCAAGCGAAGACTCACAGGTTTAC 2157
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2098 GCATCTTACACAGTAGATGCTAAGCACATTGTCTGCGCTAGCGAAGACTCACAGGTTTAC 2157
Query 2158 GTGTGGAAACACGAGGAGCCACGACTAGGAATCACCGGTAGAAAAACCGTCACCATGTGT 2217
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2158 GTGTGGAAACACGAGGAGCCACGACTAGGTATCACCGGTAGAAAAACAGTCACCATGTGT 2217
Query 2218 ACTTCTTACGAAACATTCCCGTGCAAAGATGTTTCAGTGGCAATCCCGTGGAACGGCGTT 2277
|||||||| ||||| |||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 2218 ACTTCTTATGAAACCTTCCCGTGCAAAGATGTTTCCGTGGCAGTCCCATGGAACGGCGTT 2277
Query 2278 GTAAAAGGCGAACCACCATCCACACAA-ACTCAGTCTAAAAGAAACCCAAAGAAAACT-T 2335
|||||||| |||||||||||||||||| || || || ||||||||||| || ||||| |
Sbjct 2278 GTAAAAGGTGAACCACCATCCACACAACAC-CAATCGAAAAGAAACCCGAA-AAAACCAT 2335
Query 2336 CAACTACTACTACAACTACCCCGGAAAACGCGACCACGAGTAAAAAATCAGGCCTCCCAC 2395
||||||||||||| |||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 2336 CAACTACTACTAC---TACCCCTGAAAACACGACCACGGGTAAAAAATCAGGCCTCCCAC 2392
Query 2396 CATTACCTAAGAAAAACAATGACGGCACTGCAGATGGAGCAACAGAACAACATCAAGATG 2455
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 2393 CATTACCTAAGAAAAACAATGACGGCACCGCGGATGGAGCAACAGAACAACATCAAGAAG 2452
Query 2456 ATGATCCCGCAACGCAGATTCCGCAAAACGAATCAGAGAACAACACAGGAGAGTCATTAA 2515
||||||| || ||||| ||| |||| ||||||||||||||||||||||| |||||| |||
Sbjct 2453 ATGATCCAGCTACGCATATTTCGCATAACGAATCAGAGAACAACACAGGCGAGTCAATAA 2512
Query 2516 AGCATGGGGATTCACCTTCTATATCAATCTCCTCTCGGATTTCTTCTTGGTCTTGGTTTG 2575
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2513 AGCATGGGGATTCACCTTCTATATCAATCTCCTCTCGGATTTCTTCTTGGTCGTGGTTTG 2572
Query 2576 ATAGTAGTGGCAGTCATGGAACACATTCAGTTCAGCCAACAGCTTGGGGAATGGTGATCG 2635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2573 ATAGTAGTGGCAGTCATGGAACACATTCAGTTCAGCCAACAGCTTGGGGAATGGTGATTG 2632
Query 2636 TTACAGCCACGATCAAGGGCCAAATCCGAGCTTACCAAAATTTCGGATTGCCCCGCAGGG 2695
|||||||||| |||||||||||||||||| ||||||||||||| ||||| || |||||||
Sbjct 2633 TTACAGCCACAATCAAGGGCCAAATCCGAACTTACCAAAATTTTGGATTACCACGCAGGG 2692
Query 2696 TTGGTCGTCAAGGCTCTCTGTTTTGA 2721
| ||||||||||||||||||||||||
Sbjct 2693 TCGGTCGTCAAGGCTCTCTGTTTTGA 2718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135149744442
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5