BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg349957
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06920.1 | Symbols: FLA21 | FASCICLIN-like arabinogalactan p... 1570 0.0
AT5G06910.1 | Symbols: ATJ6 | J-domain protein 6 | chr5:2140453... 1267 0.0
> AT5G06920.1 | Symbols: FLA21 | FASCICLIN-like arabinogalactan
protein 21 precursor | chr5:2142858-2143919 FORWARD LENGTH=1062
Length=1062
Score = 1570 bits (850), Expect = 0.0
Identities = 995/1065 (93%), Gaps = 9/1065 (1%)
Strand=Plus/Plus
Query 868 ATGGGTTGTTGTTCATCAGATTGCTTCGTCTACTTCGTCCTCTCCGTTGCTTTAGCTTTC 927
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGGGTTGTTGTTCATCAGATTGCTTCGTCTACTTCATCCTCTCCATTGCTTTAGCTTTC 60
Query 928 ATGGCCATCTCAAGCACTCTACGTTCACCTCCAGATTCCGAACCCACCATACCCATTGct 987
||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 ATGGCCATCTCCACCACTCTACGTTCACCTCCGGATTCCGAACCCACAATACCCATTGCT 120
Query 988 tcttcttcctcttcgtcttctctctcttTAAACGCCTCAAACGCTCTACGCCAATCCAAT 1047
| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 121 TTTTCTTCCTCTTCGCCTTCTCTCTCTTTAAACGCCTCAAACACTCTACGGCAATCTAAT 180
Query 1048 TTCAAAGCAATCGAAACTCTCCTCCACATCTCCCCTGAGATCTTCCTCTCTTCTTCTCCT 1107
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCAAAGCAATAGCCACTCTTCTCCACATCTCCCCTGAGATCTTCCTCTCTTCTTCTCCC 240
Query 1108 AACACAACCCTCTTTGCCATCGAAGATGCTTCCTTCTTCAACACGTCATCTCTTCATCCT 1167
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AACACAACCCTCTTTGCCATCGAAGATGCTTCCTTCTTCAACACGTCATCGCTTCATCCT 300
Query 1168 TTGTTTCTCAAGCAGCTTCTTCAGTATCACACACTCCCTCATATGCTTCCGATGAACGAC 1227
||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| | |||
Sbjct 301 TTGTTTCTCAAGCAGCTTCTTCACTATCACACACTCCCTCTTATGCTTTCGATGGATGAC 360
Query 1228 CTTCTTAAGAAGCCTCAAGGAACCTGTCTCTCAACGCTTCTCCACCACAAGAGTGTTCAA 1287
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 361 CTTCTCAAGAAGCCTCAAGGAACCTGTCTCCCAACGCTTCTCCACCACAAGAGTGTCCAA 420
Query 1288 ATCTCCACCG-TAGATCAAGAATCAAGAACAGCAGAAGTGAATCATGTCCGTATCTCACA 1346
|| ||||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 421 ATATCCACTGTTA-ATCAAGAATCAAGAACAGCTGAAGTCAATCATGTCCGTATCACACA 479
Query 1347 TCCCGACATGTTTCTTGGAGATTCATTGGTCATTCACGGAGTTCTTGGACCATTCTCTCC 1406
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 CCCCGACATGTTTCTTGGAGATTCATTGGTCATTCACGGAGTTATTGGACCATTCTCTCC 539
Query 1407 TCTGCAACCTCACAGTGATCATCTTCTCCAGACATCTTTATGTCAATCTGATACAAGAAA 1466
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||
Sbjct 540 TCTGCAACCTCACAGTGATCATCTTATCCACACACCTTTATGTCAATCTGATACAACAAA 599
Query 1467 CAAAACCAGTGACAACGACGAAGTTCCGGTTAACATAGACTGGATTCGGATTGTTCAGCT 1526
|||||||||| ||||||| |||||||| |||| ||||||||||| |||||||||||||||
Sbjct 600 CAAAACCAGTAACAACGAAGAAGTTCCAGTTAGCATAGACTGGACTCGGATTGTTCAGCT 659
Query 1527 CCTAAGTTCAAATGGGTTTGTGCCATTTGCAATTGGACTGCACTCTGTTCTCAATAGGAT 1586
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 660 TCTAAGTTCAAATGGGTTTGTGCCATTTGCAATTGGATTGCACTCTGTTCTCAACAGGAT 719
Query 1587 TGTGAACGATC---ATCATCACAAGAACCTGACCGGTGTAACGATTCTAGCCACACCGAA 1643
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 720 TGTGAACGATCATAATCATCACAAGAACTTGACCGGTGTAACGATTCTAGCTACACCGAA 779
Query 1644 TCTGGTCTCGTTGTCATCTGCTTCTCCGTTTCTGTATGAAGTTGTGAGACATCACATTCT 1703
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TCTGGTCTCATTGTCATCTGCTTCTCCGTTTTTGTATGAAGTTGTGAGACATCACATTCT 839
Query 1704 TGCTCAACGGCTAACAAACAAAGATTTTGCTTCAATGCCTGATAAAGCCTCATTGAAGAC 1763
|| ||||||||| ||| |||||||||||||||||||| ||||||||||| || |||||||
Sbjct 840 TGTTCAACGGCTTACATACAAAGATTTTGCTTCAATGTCTGATAAAGCCACAGTGAAGAC 899
Query 1764 ATTGGATCCTTACCAAGATCTGACAATCACCAGAAGAAATGTCAATTCGTCAT-CTGGAG 1822
||||||||||||||||||||| |||||||| ||||||||||| |||||||| | ||||
Sbjct 900 ATTGGATCCTTACCAAGATCTTACAATCACGAGAAGAAATGTTAATTCGTC-TGGAGGAG 958
Query 1823 ATTTCATGATTTCTGGAGTTGAGATTGTAGATCCAGATATGTTCTCTTCTTCAGAA-TTT 1881
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 959 ATTTCATGATTTCTGGAGTTGAGATTGTAGATCCAGATATGTTCTCTTCTTCC-AACTTT 1017
Query 1882 GTAATTCATGGAATATCACACACTCTAGAGATCCCACATGTTTAA 1926
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 GTAATTCATGGAATATCACACACTCTAGAGATCCCACATGTATAA 1062
> AT5G06910.1 | Symbols: ATJ6 | J-domain protein 6 | chr5:2140453-2142679
FORWARD LENGTH=1154
Length=1154
Score = 1267 bits (686), Expect = 0.0
Identities = 797/851 (94%), Gaps = 6/851 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAGGAAAAAGAAATCTAGGGCTTCGACAGCCGAAGAAGATAAAATTGAGATGGAC 60
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 146 ATGGGTAGGAAAAAGAAATCTAGGGCTTCGACAACCGAAGAAGATGAGATTGAGATGGAT 205
Query 61 AATGATGGGCGATCTTCTGAGAAAAGTCTTTACAAGGTTCTTGGAGTTGAAAGAAGAGCT 120
|||| ||| | ||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 206 AATGCTGGCCCATCCTCTGAGACAAGTCTTTACGAGGTTCTTGGAGTTGAAAGAAGAGCC 265
Query 121 ACTCCACAGGAAATAAGAAAAGCCTACCATAAGTTGGCATTGCGGCTTCACCCAGATAAA 180
||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct 266 ACTTCACAGGAAATAAGAAAAGCATACCATAAGTTGGCATTGAAGCTTCACCCTGATAAA 325
Query 181 AATCAGGATGATAAGGAAGCTAAAGAGAAATTCCAGCAGCTGCAAAAAGTTATATCAATT 240
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 326 AATCAGGATGATAAGGAAGCTAAAGACAAGTTCCAGCAGCTGCAAAAAGTGATATCAATT 385
Query 241 CTTGGGGATGAAGAGAAAAGGGCAGTTTATGATCAAACTGGCTCTGTTGATGATGCTGAT 300
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 386 CTTGGTGATGAAGAGAAAAGGGCAGTCTATGATCAAACTGGCTCAATTGATGATGCTGAT 445
Query 301 CTTTCTGGAGATGCGTTTGAGAATTTGCGGGAGTTCTTCCAGGCCATGTACAAGAAGGTC 360
|| |||||||||||||||||||||||||||| ||||||| || |||||| |||||||||
Sbjct 446 ATTCCTGGAGATGCGTTTGAGAATTTGCGGGATTTCTTCCGGGACATGTATAAGAAGGTC 505
Query 361 ACCGAAGCAGATATTGAAGAGTTTGAGGCAAACTACAGGGGATCTGAGTCAGAGAAGAAA 420
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 AACGAAGCTGATATTGAAGAGTTTGAGGCAAACTACAGGGGATCTGAGTCAGAGAAGAAA 565
Query 421 GACTTACTTGACCTGTTCACCAAGTTTAAGGGTAAAATGAACAGGCTATTCTGCTCAATG 480
||||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GACTTGCTTGAGCTTTTCAACAAGTTTAAGGGTAAAATGAACAGGCTATTCTGCTCAATG 625
Query 481 CTTTGCTCGGACCCGAAGCTTGATTCACACCGTTTCAAAGACATTCTTGACGAGGCCATT 540
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 626 CTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATT 685
Query 541 GCAGCAGGAGAAGTGAAGTCAAGCAAGGCATATGAGAAATGGGCAAAGAAAATTTCAGAA 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 686 GCAGCAGGAGAAGTGAAGTCAAGCAAGGCATATGAGAAATGGGCAAATAAAATTTCAGAA 745
Query 601 ACGAAACCGCCCACCAGTCCATTGAGGAAGAGGAAGAGGAAGAAGT---CAGCAAAGGAT 657
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 746 ACGAAACCGCCCACCAGTCCATTGAGGAAGAGGAAGAAGAAGAAGTCAGCAGCAAAGGAT 805
Query 658 TCAGAGACAGATCTTTGCTTGATGATTGCGAAACGACAAGAGGAGAGGAAAGGGAAGGTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TCAGAGACAGATCTTTGCTTGATGATTGCGAAACGACAAGAGGAGAGGAAAGGGAAGGTG 865
Query 718 GATTCAATGTTTTCATCACTCATCTCCAGGTATGGTGGTAATGCGGAAGCAGAGCCTACT 777
|| || |||||||||||||| ||||| |||||||||||| |||||||||||||||| |||
Sbjct 866 GACTCGATGTTTTCATCACTTATCTCTAGGTATGGTGGTGATGCGGAAGCAGAGCCCACT 925
Query 778 GAAGAAGAATTTGAAGCTGCCCAGAGAAGGATTGAAAGGAGAAGA---CCATCCAAGAAG 834
|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 926 GAAGAAGAATTTGAAGCTGCCCAGAGAAGGATTGAAAGCAAAAGAAAACCATCCAAGAAG 985
Query 835 TCTAGAGGAAA 845
|||||||||||
Sbjct 986 TCTAGAGGAAA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95381035500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5