BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg350042 Length=1587 Score E Sequences producing significant alignments: (Bits) Value AT5G07830.1 | Symbols: AtGUS2, GUS2 | glucuronidase 2 | chr5:25... 2401 0.0 AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24... 898 0.0 > AT5G07830.1 | Symbols: AtGUS2, GUS2 | glucuronidase 2 | chr5:2503323-2506688 FORWARD LENGTH=1954 Length=1954 Score = 2401 bits (1300), Expect = 0.0 Identities = 1498/1590 (94%), Gaps = 27/1590 (2%) Strand=Plus/Plus Query 1 ATGGCTCAAGAAACGAAACGTGCATCGATCGTTGTGGAAGGAGCCCGTCGAGTCTGTGAG 60 ||||||||||||| ||||||||||||||||||| | ||||||| || ||||| |||||| Sbjct 268 ATGGCTCAAGAAATGAAACGTGCATCGATCGTTATCCAAGGAGCTCGACGAGTTTGTGAG 327 Query 61 ACCGACGAGAACTTTGTCTGTGCCACATTGGACTGGTGGCCTCATGACAAGTGCAACTAT 120 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 328 ACCGATGAGAACTTTGTCTGTGCGACATTGGACTGGTGGCCTCATGACAAGTGCAACTAT 387 Query 121 GACCAATGTCCTTGGGGTTACTCTTCAGTTATCAATATGGATTTAACTCGTCCCCTTCTT 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 388 GACCAATGTCCTTGGGGTTACTCTTCAGTTATCAATATGGATTTAACGCGTCCCCTTCTT 447 Query 181 ACTAAAGCTATTCAAGCTTTCAAGCCATTGAGGATAAGAATTGGTGGTTC-CTTGCAAGA 239 |||||||||||| ||||||||||||| ||||||||||||||||||||||| | ||||||| Sbjct 448 ACTAAAGCTATTAAAGCTTTCAAGCCGTTGAGGATAAGAATTGGTGGTTCGC-TGCAAGA 506 Query 240 TCAAGTAACGTACGACGTAGGAAATCTCAAAACTCCTTGCCGTCCATTCCAAAAAATGAA 299 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 TCAAGTTATTTACGACGTAGGAAATCTCAAAACTCCTTGCCGTCCATTCCAAAAAATGAA 566 Query 300 CAGCGGTTTGTTTGGATTCTCTAAAGGATGCTTGCACATGAAGA-GATGGGACGAGCTCA 358 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 567 CAGCGGTTTGTTTGGATTCTCTAAAGGATGCTTGCACATGAA-ACGATGGGACGAGCTCA 625 Query 359 ACAGTTTCCTAACCGCAACCGGAGCGGTAGTGACATTCGGTTTAAACGCTTTGAGTGGGA 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 626 ACAGTTTCCTAACCGCAACCGGAGCGGTAGTGACATTCGGTTTAAACGCTTTGCGTGGGA 685 Query 419 GACACAAACTCCGCGGAAAGGCGTGGGGTGGGGCGTGGGATCACATAAACACTCAAGATT 478 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 686 GACACAAACTCCGCGGAAAGGCGTGGGGTGGTGCATGGGATCACATAAACACTCAAGATT 745 Query 479 TCATAAACTATACAGTCTCAAAGGGTTACGTTATTGATTCTTGGGAATTCGGTTTCCTTG 538 || ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 746 TCTTAAACTACACAGTCTCGAAGGGTTACGTTATTGATTCTTGGGAA------------- 792 Query 539 TTCTCGGTATAGGAAACGAGCTGAGTGGAAGCGGGGTTGGTGCAAGCGTGAGCGCAGAGC 598 | || ||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 793 -T-TC------GGAAACGAGCTGAGTGGAAGCGGAGTTGGTGCGAGCGTGAGCGCAGAGC 844 Query 599 TTTATGGGAAAGACTTGATTGTACTGAAAGATGTAATCAACACAGTTTATAAAAATTCTC 658 |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 845 TTTACGGGAAAGACTTGATTGTACTTAAAGATGTAATCAACAAAGTTTATAAAAATTCTT 904 Query 659 GGTTACACAAGCCTATACTTGTCGCTCCTGGAGGGTTCTATGAACAACAATGGTACACCA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 GGTTACACAAGCCTATACTTGTCGCTCCTGGAGGGTTCTATGAACAACAATGGTACACCA 964 Query 719 AACTTCTTCACATCTCCGGTCCTGGTGTTGTCGACGTCGTGACTCATCATATATACAATC 778 |||||||| | || ||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 965 AACTTCTTGAAATTTCCGGTCCTAGTGTTGTCGACGTTGTGACTCATCATATATACAATC 1024 Query 779 TTGGTTCAGGTAATGATCCTGCGCTTGTGAAGAAGATAATGGATCCGAGTTACTTAAGCC 838 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 1025 TTGGTTCAGGAAATGATCCCGCGCTGGTGAAGAAGATAATGGATCCGAGTTATTTAAGCC 1084 Query 839 AGGTATCAAAAACGTTCAAGGACGTGAATCAGACGATTCAAGAACATGGACGGTGGGCTT 898 ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 1085 AGGTATCAAAAACATTCAAGGACGTGAACCAGACGATTCAAGAACATGGACCGTGGGCTT 1144 Query 899 CTCCTTGGGTTGGAGAGTCTGGTGGAGCTTACAATAGTGGTGGTCGTCATGTTTCTGATA 958 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | Sbjct 1145 CTCCTTGGGTTGGAGAATCTGGTGGAGCTTACAATAGTGGTGGCCGTCATGTTTCTGACA 1204 Query 959 CATTCATAGATAGTTTCTGGTATCTAGATCAGCTTGGAATGTCGGCGAGATACAACACTA 1018 ||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 1205 CATTCATAGATAGCTTCTGGTATCTAGATCAGCTTGGAATGTCAGCGAGACACAACACTA 1264 Query 1019 AAGTTTACTGCAGACAGACTTTGGTTGGAGGGTTTTACGGCTTGCTCGAAAAGGGAACAT 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1265 AAGTTTACTGCAGACAGACTTTGGTTGGAGGGTTTTACGGCTTGCTCGAAAAGGGAACGT 1324 Query 1079 TTGTTCCAAATCCTGATTACTATAGTGCGCTGCTTTGGCATCGTTTAATGGGAAAAGGGG 1138 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1325 TTGTTCCAAATCCTGATTACTATAGCGCGCTGCTTTGGCATCGTTTAATGGGAAAAGGGG 1384 Query 1139 TTCTTGCGGTTCAAACAGATGGACCGCCACAGCTACGAGTTTATGCACATTGTTCAAAAG 1198 |||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1385 TTCTTGCGGTGCAGACAGATGGACCGCCACAGCTACGGGTTTACGCACATTGTTCAAAAG 1444 Query 1199 GAAGAGCCGGTGTGACATTGCTTCTGATAAATCTAAGCAATCAATTGGATTTTACGGTTA 1258 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1445 GAAGAGCCGGTGTGACATTGCTACTGATAAATCTAAGCAATCAATCGGATTTTACGGTTA 1504 Query 1259 GTGTCAGCAATGGCATAAAGGTTGTTTTGAATGCGGAATCGAGCAAGAAGAAGTCATTGT 1318 ||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||| Sbjct 1505 GTGTCAGCAATGGCATAAACGTGGTTTTGAATGCGGAATCAAGGAAGAAGAAGTCATTGT 1564 Query 1319 TGGATACTTTAAAAAGACCATTTTCTTGGATTGGAAGCAAAGCTTCGGATGGATATTTGA 1378 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1565 TGGATACTTTAAAAAGACCATTTTCTTGGATTGGAAGCAAAGCTTCTGATGGATATTTGA 1624 Query 1379 ACAGAGAAGAGTATCATCTGACACCAGAAAACGGTGAGTTGCAG-AGCAAAACAATGATC 1437 | |||||||||||||||||||||||||||||||||| ||||| | |||||||||||| || Sbjct 1625 ATAGAGAAGAGTATCATCTGACACCAGAAAACGGTGTGTTGC-GCAGCAAAACAATGGTC 1683 Query 1438 TTGAATGGTAAATCGTTAAAACCGACGGTAACAGGAGATATCCCGAGCCTTGAACCGGTC 1497 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1684 TTGAATGGTAAATCGTTAAAACCGACGGCAACAGGAGATATCCCGAGCCTTGAACCGGTC 1743 Query 1498 CTCCGTGGTGCGAACTCTCCGCTTAATGTCTTGCCATTGTCGATGTCGTTCATTGTGTTG 1557 |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1744 CTCCGTAGTGTGAACTCTCCGCTTAATGTCTTGCCATTGTCGATGTCGTTCATTGTGTTA 1803 Query 1558 CCTAATTTTGATGCTTCTGCTTGTTCATGA 1587 |||||||||||||||||||||||||||||| Sbjct 1804 CCTAATTTTGATGCTTCTGCTTGTTCATGA 1833 > AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24632154-24635303 REVERSE LENGTH=1909 Length=1909 Score = 898 bits (486), Expect = 0.0 Identities = 1241/1589 (78%), Gaps = 118/1589 (7%) Strand=Plus/Plus Query 46 CGTCGAGTCTG-TGAGACCGACGAGAACTTTGTCTGTGCCAC-ATTGGACTGGTGGCCTC 103 |||||| || | ||||||||| ||||||||| |||| || || || || |||||||| | Sbjct 252 CGTCGAATC-GCTGAGACCGATGAGAACTTTATCTGCGCAACGCTT-GATTGGTGGCCAC 309 Query 104 ATGACAAGTGCAACTATGACCAATGTCCTTGGGGTTACTCTTCAGTTATCAATATGGATT 163 ||| || ||||||||||| |||||||||||||||||| | || | |||||| || | | Sbjct 310 CTGAAAAATGCAACTATGATCAATGTCCTTGGGGTTACGCATCTCTCATCAATTTGAACT 369 Query 164 TAAC-TCGTCCCCTTCTTACTAAAGCTATTCAAGCTTTCAAGCCATTGAGGATAAGAATT 222 || | || ||| |||||| ||||||||||||||||||| | | | |||||||||||||| Sbjct 370 TAGCTTC-TCCTCTTCTTGCTAAAGCTATTCAAGCTTTTAGGACGTTGAGGATAAGAATA 428 Query 223 GGTGGTTCCTTGCAAGATCAAGT-AACGTACGACGTAGGA-AATCTCAAAACTCCTTGC- 279 ||||||||||||||||||||||| | | |||||||| ||| | | | || ||||||||| Sbjct 429 GGTGGTTCCTTGCAAGATCAAGTGATC-TACGACGTTGGAGACT-TGAAGACTCCTTGCA 486 Query 280 CGTCCA-TTCCAA-AAAA-TGAACAG-CGGTTTGTTTGGATTCTCTAAAGGATGCTTGCA 335 | | || || ||| |||| || || | ||| ||||| ||||||||| ||||||| ||| | Sbjct 487 C-T-CAGTT-CAAGAAAACTG-AC-GACGGATTGTTCGGATTCTCTGAAGGATGTTTGTA 541 Query 336 CATGAAGA-GATGGGACG-AGCTCAA-CAGTTTCCT-AACCGCAACCGGAGCGGTAGTGA 391 ||||| | | ||||||| || | || || |||| | || |||||| ||||| | |||| Sbjct 542 TATGAA-ACGTTGGGACGAAG-TTAACCA-TTTCTTCAA-CGCAACGGGAGCTATTGTGA 597 Query 392 CATTCGGTTTAAACGCTTTG-AGTGGGAGACACAAACTCCGCGGAAAGGCGTGGGGTGGG 450 | |||||||| ||||| || | |||||| | |||||| ||||| |||||||| || Sbjct 598 CTTTCGGTTTGAACGCGCTGCA-CGGGAGAAATAAACTCAACGGAACTGCGTGGGGAGGT 656 Query 451 GCGTGGGATCACATAAACACTCAAGATTTCATAAACTATACAGTCTCAAAGGGTTACGTT 510 | |||||||| | |||||||| |||||||| ||||| ||||||||||||||||| | | Sbjct 657 GATTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAGGGTTATGCT 716 Query 511 ATTGATTCTTGGGAATTCGGTTTCCTTGTTCTCGGTATAGGAAACGAGCTGAGTGGAAGC 570 || || || |||| | ||| | || | || ||||| ||||||||| Sbjct 717 ATAGACTCGTGGG-A------------GTT-T-GG--T----AATGAGCTTAGTGGAAGC 755 Query 571 GGG-GTTGGTGCAAGCGTGAGCGCAGAGCTTTATGGGAAAGACTTGATTGTACTGAAAGA 629 ||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||| | Sbjct 756 GGGATTTGG-GCAAGCGTGAGTGTAGAGCTTTATGGGAAAGACTTGATTGTACTGAAAAA 814 Query 630 TGTAATCAA-CACAGTTTATAAAAATTCTCGGTTACACAAGCCTATACTTGTCGCTCCTG 688 ||||||||| || ||||| || |||||| | || ||||||| | |||| ||||| | Sbjct 815 TGTAATCAAGAAC-GTTTACAAGAATTCT-AG-AAC-CAAGCCTTTGGTTGTAGCTCCAG 870 Query 689 GAGGGTTCTATGAACAACAATGGTACACCAAACTTCTTC-ACATCTCCGGTCCTGGTGTT 747 | || |||| |||| ||||||||||| | | ||||||| | |||| || ||||||||| Sbjct 871 GTGGATTCTTTGAAGAACAATGGTACTCGGAGCTTCTTCGGC-TCTCTGGGCCTGGTGTT 929 Query 748 GTCGACGTCGTGACTCATCATATATACAATCTTGGTTCAGGTAATGATCCTGCGCTTGTG 807 | || ||| |||||||||||||||||||||||||| |||| ||||||||| ||| ||| Sbjct 930 CTTGATGTCCTGACTCATCATATATACAATCTTGGTCCAGGGAATGATCCTAAGCTAGTG 989 Query 808 AAGAAGATAATGGATCCGAGTTACTTAAGCCAGGTAT--CAAAAACGTTCAAGGACGTGA 865 || |||||| | ||||| | |||||| ||| || || | || ||| | | |||| Sbjct 990 AATAAGATACTAGATCCAAATTACTTGAGC--GGAATTTCGGAATTATTCGCGAATGTGA 1047 Query 866 ATCAGACGATTCAAGAACATGGACGGTGGGCTTCTCCTTGGGTTGGAGA-GTCTGGTGGA 924 | || || |||||||||||||||| |||||| || ||||||||||||| | |||||||| Sbjct 1048 ACCAAACAATTCAAGAACATGGACCTTGGGCTGCTGCTTGGGTTGGAGAAG-CTGGTGGA 1106 Query 925 GC-TTACAATAGTGGTGGTCGTCATGTTTCTGATACATTCAT-AGATAGTTTCTGGTATC 982 || || || |||||||| ||||| ||||| || |||||||| | | ||||||||||| | Sbjct 1107 GCCTTT-AACAGTGGTGGCCGTCAGGTTTCCGAGACATTCATTA-ACAGTTTCTGGTA-C 1163 Query 983 T-AGATCAGCTTGGAATGTCGGCGA-G-ATACAACACTAAAGTTTACTGCAGACA-GACT 1038 | ||||||||| || || ||| ||| | ||| | ||| ||||| ||||||||||| | || Sbjct 1164 TTAGATCAGCTCGGTATTTCGTCGAAGCATA-A-CACCAAAGTATACTGCAGACAAG-CT 1220 Query 1039 TTGGTTGGAGGGTTT-TACGG-CTTGCTCGAAAAGGGAACATTTGTTCCAAATCCTGATT 1096 ||||| ||||| ||| ||||| || ||| ||||||| ||| |||||||||||||| |||| Sbjct 1221 TTGGTCGGAGG-TTTCTACGGTCT-GCTTGAAAAGGAAACGTTTGTTCCAAATCCAGATT 1278 Query 1097 ACTATAGTGCGCTGCTTTGGCATCGTTTAATGGGAAAAGGGGTTCTTG-CGGTTCAAACA 1155 |||| || ||||| |||||||||||||| ||||| ||||| |||| | || |||| || Sbjct 1279 ACTACAGCGCGCTTCTTTGGCATCGTTTGATGGGTAAAGGCATTCTCGGCG-TTCAGAC- 1336 Query 1156 GA-TGGAC-CGCCAC-AGCTACGAGTTTATGCACATTGTTC-AAAAGGAAGAGCCGGTGT 1211 || || | || | | ||||||| ||| | ||||| || ||||| |||||| ||| | Sbjct 1337 GACTGC-CTCGG-AGTATCTACGAGCTTACGTTCATTGCTCCAAAAG-AAGAGCGGGTAT 1393 Query 1212 GAC-ATTGCTTCTGATAAATCTAAGCAATCA-ATTGGAT-TTTACGGTTAGT-GTCAGCA 1267 || ||| |||||||| ||||| || || || | | | ||||| || | ||||||| Sbjct 1394 AACGATT-CTTCTGATCAATCTGAGTAAGCACAC-G-ACGTTTACAGTC-GCAGTCAGCA 1449 Query 1268 ATGGCATAAAGGTTGTTTTG-AATGCGGAATCGA-GCAAGAAGAAGTCATTGTTGGATAC 1325 ||||| | ||||| |||||| || || ||||||| | |||| ||| || || ||||| || Sbjct 1450 ATGGCGTGAAGGTGGTTTTGCAA-GCAGAATCGATG-AAGAGGAAATCGTTCTTGGAAAC 1507 Query 1326 TTTAAAAAGACCAT-TTTCTTGGATTGGAAGCAAAGCTTCGGATGGATATTTGAACAGAG 1384 | || || | | |||||||| |||||| |||||||||||| |||||||||||||||| Sbjct 1508 AATCAAGAG-CAAGGTTTCTTGGGTTGGAAACAAAGCTTCGGACGGATATTTGAACAGAG 1566 Query 1385 AAGAGTATCATCT-GACACCAGAAA-ACGGTGAGTTGCAG-AGCAAAACAATGATCTTGA 1441 |||||||||| || || || ||| ||||||| |||| | ||||| | |||| |||||| Sbjct 1567 AAGAGTATCA-CTTGAGTCCC-AAAGACGGTGACTTGC-GTAGCAAGATAATGCTCTTGA 1623 Query 1442 ATGGTAAATCGTTAAAACCGACGGTAACAGGAGATATCCCGA-GCCTTGAACCGGTCC-T 1499 |||||||| | || |||||| | || ||||||||||| | || |||| ||||||| | Sbjct 1624 ATGGTAAACCTTTGGTACCGACAGCCACCGGAGATATCCCAAAGC-TTGAGCCGGTCCGT 1682 Query 1500 CCGTGGTGCGAACTCTCCGCTTAATGTCT-TGCCATTGTCGATGTCGTTCATTGTGTTGC 1558 | ||||| ||| |||||| || || || | || ||||||| || ||||||||||||| Sbjct 1683 CA-TGGTGTGAAATCTCCGGTTTATATCAAT-CCGCTGTCGATCTCTTTCATTGTGTTGC 1740 Query 1559 CTAATTTTGATGCTTCTGCTTGTTCATGA 1587 ||| ||||||||| |||||||||| ||| Sbjct 1741 CTACCTTTGATGCTCCTGCTTGTTCTTGA 1769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78363050745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5